Download MendeleyCrystal structure of putative thiolase from Sphaerobacter thermophilus DSM 20745
Chang, C., Tesar, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
4U4E
Crystal structure of putative thiolase from Sphaerobacter thermophilus DSM 20745
- PDB DOI: https://doi.org/10.2210/pdb4U4E/pdb
- Classification: TRANSFERASE
- Organism(s): Sphaerobacter thermophilus DSM 20745
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-07-23 Released: 2014-08-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.221
- R-Value Work: 0.172
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thiolase | 383 | Sphaerobacter thermophilus DSM 20745 | Mutation(s): 0 Gene Names: Sthe_0538 |  | |
UniProt | |||||
Find proteins for D1C159 (Sphaerobacter thermophilus (strain DSM 20745 / S 6022)) Explore D1C159 Go to UniProtKB: D1C159 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D1C159 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.221
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.54 | α = 90 |
| b = 75.54 | β = 90 |
| c = 123.494 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | phasing |
| Coot | model building |
| SBC-Collect | data collection |
Entry History
Deposition Data
- Released Date: 2014-08-06 Deposition Author(s): Chang, C., Tesar, C., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2014-08-06
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Other, Refinement description, Source and taxonomy - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Refinement description
