4TYS

Crystal structure of Canavalia maritima lectin (ConM) complexed with a dinucleotide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.219 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Canavalia maritima lectin (ConM) complexed with a dinucleotide

Vieira, D.B.H.A.Delatorre, P.Cavada, B.S.Silva-Filho, J.C.Nobrega, R.B.Teixeira, C.S.Lima, E.M.Rocha, B.A.M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Concanavalin-A
A, B, C, D, E
A, B, C, D, E, F
237Canavalia lineataMutation(s): 0 
UniProt
Find proteins for P81460 (Canavalia lineata)
Explore P81460 
Go to UniProtKB:  P81460
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81460
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
3XZ
Query on 3XZ

Download Ideal Coordinates CCD File 
G [auth E]bis{[(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxytetrahydrofuran-2-yl]methyl} hydrogen phosphate
C20 H25 N10 O8 P
PPQXTUORNPDZDR-PRSXHHODSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.219 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 140.69α = 90
b = 140.57β = 90
c = 199.02γ = 90
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-07-22
    Type: Initial release
  • Version 1.1: 2015-10-14
    Changes: Data collection
  • Version 1.2: 2023-12-27
    Changes: Data collection, Database references, Derived calculations