Download MendeleyStudy on the structure and function of inorganic pyrophosphatase from Schistosoma japonicum
Wu, Q.F.To be published.
4QLZ
The structure of inorganic pyrophosphatase from Schistosoma japonicum
- PDB DOI: https://doi.org/10.2210/pdb4QLZ/pdb
- Classification: HYDROLASE, METAL BINDING PROTEIN
- Organism(s): Schistosoma japonicum
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-06-13 Released: 2015-07-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.33 Å
- R-Value Free: 0.270
- R-Value Work: 0.211
- R-Value Observed: 0.214
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SJCHGC07024 protein | 287 | Schistosoma japonicum | Mutation(s): 1 |  | |
UniProt | |||||
Find proteins for Q5DE13 (Schistosoma japonicum) Explore Q5DE13 Go to UniProtKB: Q5DE13 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5DE13 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | G [auth A], L [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CO Query on CO | C [auth A] D [auth A] E [auth A] F [auth A] H [auth B] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.33 Å
- R-Value Free: 0.270
- R-Value Work: 0.211
- R-Value Observed: 0.214
- Space Group: P 32
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.08 | α = 90 |
| b = 76.08 | β = 90 |
| c = 123.41 | γ = 120 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHENIX | model building |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2015-07-15 Deposition Author(s): Wu, Q.F.
Revision History (Full details and data files)
- Version 1.0: 2015-07-15
Type: Initial release - Version 1.1: 2018-01-24
Changes: Experimental preparation - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
