Download MendeleyThe crystal structure of a solute binding protein from Bacillus anthracis str. Ames in complex with quorum-sensing signal autoinducer-2 (AI-2).
Tan, K., Gu, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
4PZ0
The crystal structure of a solute binding protein from Bacillus anthracis str. Ames in complex with quorum-sensing signal autoinducer-2 (AI-2)
- PDB DOI: https://doi.org/10.2210/pdb4PZ0/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Bacillus anthracis str. Ames
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-03-28 Released: 2014-04-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.149
- R-Value Work: 0.128
- R-Value Observed: 0.129
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| sugar ABC transporter, sugar-binding protein | 324 | Bacillus anthracis str. Ames | Mutation(s): 0 Gene Names: BA_2975, BAS2763, GBAA_2975 |  | |
UniProt | |||||
Find proteins for A0A6H3AKG3 (Bacillus anthracis) Explore A0A6H3AKG3 Go to UniProtKB: A0A6H3AKG3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6H3AKG3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PAV Query on PAV | B [auth A] | (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran C5 H10 O5 BVIYGXUQVXBHQS-IUYQGCFVSA-N |  | ||
| EDO Query on EDO | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | J [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.149
- R-Value Work: 0.128
- R-Value Observed: 0.129
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34PZ0
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.005 | α = 90 |
| b = 58.067 | β = 95.58 |
| c = 63.194 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2014-04-09 Deposition Author(s): Tan, K., Gu, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2014-04-09
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Database references, Derived calculations, Structure summary
