Download Mendeley1.1A X-RAY STRUCTURE OF THE APO CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE 1, aa 1-277
Temmerman, K., Simon, B., Wilmanns, M.To be published.
4PF4
1.1A X-RAY STRUCTURE OF THE APO CATALYTIC DOMAIN OF DEATH-ASSOCIATED PROTEIN KINASE 1, aa 1-277
- PDB DOI: https://doi.org/10.2210/pdb4PF4/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2014-04-28 Released: 2014-05-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.13 Å
- R-Value Free: 0.149
- R-Value Work: 0.117
- R-Value Observed: 0.118
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Death-associated protein kinase 1 | 278 | Homo sapiens | Mutation(s): 0 Gene Names: DAPK1, DAPK EC: 2.7.11.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P53355 (Homo sapiens) Explore P53355 Go to UniProtKB: P53355 | |||||
PHAROS: P53355 GTEx: ENSG00000196730 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P53355 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | G [auth A] H [auth A] I [auth A] J [auth A] K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| MG Query on MG | N [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| NA Query on NA | F [auth A], M [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.13 Å
- R-Value Free: 0.149
- R-Value Work: 0.117
- R-Value Observed: 0.118
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.516 | α = 90 |
| b = 62.005 | β = 90 |
| c = 88.375 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data reduction |
Entry History
Deposition Data
- Released Date: 2014-05-14 Deposition Author(s): Temmerman, K., Simon, B., Wilmanns, M.
Revision History (Full details and data files)
- Version 1.0: 2014-05-14
Type: Initial release - Version 1.1: 2014-07-16
Changes: Database references, Structure summary - Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Refinement description
