4ORD

Crystal Structure of Zebra Fish Thioesterase Superfamily Member 2

PDB DOI: https://doi.org/10.2210/pdb4ORD/pdb

Classification: HYDROLASE
Organism(s): Danio rerio
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-02-11 Released: 2015-02-11
Deposition Author(s): Yu, S.S., Li, H., Gao, F., Xu, H., Gong, W.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.225
R-Value Work: 0.193
R-Value Observed: 0.195

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure and Potential Physiological Role of Zebra Fish Thioesterase Superfamily Member 2 (fTHEM2)

Yu, S.S., Li, H., Gao, F., Wang, Y., Miao, L.Y., Zhang, J., Xu, H., Gong, W.M.

To be published.

Macromolecule Content

Total Structure Weight: 64.61 kDa
Atom Count: 4,463
Modelled Residue Count: 552
Deposited Residue Count: 596
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioesterase Superfamily Member 2	A, B, C, D	149	Danio rerio	Mutation(s): 0 Gene Names: acot13 EC: 3.1.2
UniProt
Find proteins for F6P1Y9 (Danio rerio) Explore F6P1Y9 Go to UniProtKB: F6P1Y9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F6P1Y9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.225
R-Value Work: 0.193
R-Value Observed: 0.195
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.064	α = 90
b = 74.35	β = 93.72
c = 96.59	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-02-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-02-11
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.