4OFQ

Structure of the C-terminal domain of the Streptococcus pyogenes antigen I/II-family protein AspA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the C-terminal domain of AspA (antigen I/II-family) protein from Streptococcus pyogenes.

Hall, M.Nylander, S.Jenkinson, H.F.Persson, K.

(2014) FEBS Open Bio 4: 283-289

  • DOI: https://doi.org/10.1016/j.fob.2014.02.012
  • Primary Citation of Related Structures:  
    4OFQ

  • PubMed Abstract: 

    The pathogenic bacteria Streptococcus pyogenes can cause an array of diseases in humans, including moderate infections such as pharyngitis (strep throat) as well as life threatening conditions such as necrotizing fasciitis and puerperal fever. The antigen I/II family proteins are cell wall anchored adhesin proteins found on the surfaces of most oral streptococci and are involved in host colonization and biofilm formation. In the present study we have determined the crystal structure of the C2-3-domain of the antigen I/II type protein AspA from S. pyogenes M type 28. The structure was solved to 1.8 Å resolution and shows that the C2-3-domain is comprised of two structurally similar DEv-IgG motifs, designated C2 and C3, both containing a stabilizing covalent isopeptide bond. Furthermore a metal binding site is identified, containing a bound calcium ion. Despite relatively low sequence identity, interestingly, the overall structure shares high similarity to the C2-3-domains of antigen I/II proteins from Streptococcus gordonii and Streptococcus mutans, although certain parts of the structure exhibit distinct features. In summary this work constitutes the first step in the full structure determination of the AspA protein from S. pyogenes.


  • Organizational Affiliation

    Department of Chemistry, Umeå University, SE-901 87 Umeå, Sweden.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative cell surface protein
A, B
347Streptococcus pyogenes MGAS6180Mutation(s): 0 
Gene Names: M28_Spy1325
UniProt
Find proteins for Q48S75 (Streptococcus pyogenes serotype M28 (strain MGAS6180))
Explore Q48S75 
Go to UniProtKB:  Q48S75
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ48S75
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.184 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.002α = 90
b = 104.979β = 90
c = 74.442γ = 90
Software Package:
Software NamePurpose
APEXdata collection
MOLREPphasing
PHENIXrefinement
SAINTdata reduction
SADABSdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-03-12
    Type: Initial release
  • Version 1.1: 2014-07-02
    Changes: Database references
  • Version 1.2: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description