Download MendeleyX-ray Crystal Structure of Isovaleryl-CoA Dehydrogenase from Brucella suis
Fairman, J.W., Edwards, T.E., Lorimer, D.To be published.
4O5M
X-ray Crystal Structure of Isovaleryl-CoA Dehydrogenase from Brucella suis
- PDB DOI: https://doi.org/10.2210/pdb4O5M/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Brucella suis 1330
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-12-19 Released: 2014-01-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.234
- R-Value Work: 0.200
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Isovaleryl-CoA dehydrogenase | 390 | Brucella suis 1330 | Mutation(s): 0 Gene Names: ivd, BR0020, BS1330_I0020 EC: 1.3.99.10 |  | |
UniProt | |||||
Find proteins for A0A0H3G544 (Brucella suis biovar 1 (strain 1330)) Explore A0A0H3G544 Go to UniProtKB: A0A0H3G544 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3G544 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG5 Query on PG5 | F [auth B], G [auth C], H [auth D] | 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE C8 H18 O4 YFNKIDBQEZZDLK-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.234
- R-Value Work: 0.200
- R-Value Observed: 0.202
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34O5M
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.21 | α = 90 |
| b = 91.07 | β = 99.25 |
| c = 102.14 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2014-01-01 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2014-01-01
Type: Initial release - Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations
