Download MendeleyCrystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor
Sampathkumar, P., Casadevall, A., Almo, S.C.To be published.
4NOF
Crystal structure of the second Ig domain from mouse Polymeric Immunoglobulin receptor [PSI-NYSGRC-006220]
- PDB DOI: https://doi.org/10.2210/pdb4NOF/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2013-11-19 Released: 2013-12-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.199
- R-Value Work: 0.180
- R-Value Observed: 0.181
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymeric immunoglobulin receptor | 125 | Mus musculus | Mutation(s): 0 Gene Names: Pigr |  | |
UniProt | |||||
Find proteins for O70570 (Mus musculus) Explore O70570 Go to UniProtKB: O70570 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O70570 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | C [auth A], D [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| GOL Query on GOL | E [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.199
- R-Value Work: 0.180
- R-Value Observed: 0.181
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.388 | α = 90 |
| b = 35.365 | β = 105.96 |
| c = 73.238 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-3000 | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2013-12-04 Deposition Author(s): Sampathkumar, P., Kumar, P.R., Ahmed, M., Banu, R., Bhosle, R., Calarese, D.A., Celikgil, A., Chamala, S., Chan, M.K., Chowdhury, S., Fiser, A., Garforth, S.J., Glenn, A.S., Hillerich, B., Khafizov, K., Attonito, J., Love, J.D., Patel, H., Patel, R., Seidel, R.D., Smith, B., Stead, M., Casadevall, A., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Revision History (Full details and data files)
- Version 1.0: 2013-12-04
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2023-09-20
Changes: Data collection, Database references, Refinement description, Structure summary
