4MUP

Crystal structure of Agrobacterium tumefaciens ATU3138 (EFI target 505157), apo structure

PDB DOI: https://doi.org/10.2210/pdb4MUP/pdb

Classification: HYDROLASE
Organism(s): Agrobacterium fabrum str. C58
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-09-23 Released: 2014-01-29
Deposition Author(s): Vetting, M.W., Bouvier, J.T., Groninger-Poe, F., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.181
R-Value Work: 0.147
R-Value Observed: 0.149

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Agrobacterium tumefaciens ATU3138 (EFI target 505157), apo structure

Vetting, M.W., Bouvier, J.T., Groninger-Poe, F., Imker, H.J., Gerlt, J.A., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 102.59 kDa
Atom Count: 7,599
Modelled Residue Count: 842
Deposited Residue Count: 936
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AMIDOHYDROLASE	A, B, C	312	Agrobacterium fabrum str. C58	Mutation(s): 0 Gene Names: Atu3138
UniProt
Find proteins for A9CEQ7 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CEQ7 Go to UniProtKB: A9CEQ7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A9CEQ7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.181
R-Value Work: 0.147
R-Value Observed: 0.149
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.202	α = 90
b = 77.557	β = 95.49
c = 99.714	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-01-29

Deposition Author(s):

Groninger-Poe, F.

Enzyme Function Initiative (EFI)

Revision History (Full details and data files)

Version 1.0: 2014-01-29
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.