Download MendeleyCrystal structure of1-pyrroline-4-hydroxy-2-carboxylate deaminase from Brucella melitensis ATCC 23457
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Lukacz, C., Lorimer, D., Edwards, T.To be published.
4MPQ
Crystal structure of1-pyrroline-4-hydroxy-2-carboxylate deaminase from Brucella melitensis ATCC 23457
- PDB DOI: https://doi.org/10.2210/pdb4MPQ/pdb
- Classification: LYASE
- Organism(s): Brucella melitensis ATCC 23457
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-09-13 Released: 2013-09-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.185
- R-Value Work: 0.159
- R-Value Observed: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydrodipicolinate synthetase | 329 | Brucella melitensis ATCC 23457 | Mutation(s): 0 Gene Names: BM28_B0232, BMEA_B0240 EC: 3.5.4.22 |  | |
UniProt | |||||
Find proteins for C0RKH4 (Brucella melitensis biotype 2 (strain ATCC 23457)) Explore C0RKH4 Go to UniProtKB: C0RKH4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C0RKH4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.185
- R-Value Work: 0.159
- R-Value Observed: 0.160
- Space Group: P 63 2 2
- Diffraction Data: https://doi.org/10.18430/M34MPQ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.06 | α = 90 |
| b = 95.06 | β = 90 |
| c = 125.33 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| JDirector | data collection |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2013-09-25 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2013-09-25
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
