4LEP

Structural insights into substrate recognition in proton dependent oligopeptide transporters


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.325 
  • R-Value Work: 0.275 
  • R-Value Observed: 0.277 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Structural insights into substrate recognition in proton-dependent oligopeptide transporters.

Guettou, F.Quistgaard, E.M.Tresaugues, L.Moberg, P.Jegerschold, C.Zhu, L.Jong, A.J.Nordlund, P.Low, C.

(2013) EMBO Rep 14: 804-810

  • DOI: https://doi.org/10.1038/embor.2013.107
  • Primary Citation of Related Structures:  
    4LEP

  • PubMed Abstract: 

    Short-chain peptides are transported across membranes through promiscuous proton-dependent oligopeptide transporters (POTs)--a subfamily of the major facilitator superfamily (MFS). The human POTs, PEPT1 and PEPT2, are also involved in the absorption of various drugs in the gut as well as transport to target cells. Here, we present a structure of an oligomeric POT transporter from Shewanella oneidensis (PepTSo2), which was crystallized in the inward open conformation in complex with the peptidomimetic alafosfalin. All ligand-binding residues are highly conserved and the structural insights presented here are therefore likely to also apply to human POTs.


  • Organizational Affiliation

    Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17177 Stockholm, Sweden.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proton:oligopeptide symporter POT family
A, B
523Shewanella oneidensis MR-1Mutation(s): 0 
Gene Names: SO_1277
Membrane Entity: Yes 
UniProt
Find proteins for Q8EHE6 (Shewanella oneidensis (strain MR-1))
Explore Q8EHE6 
Go to UniProtKB:  Q8EHE6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8EHE6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.325 
  • R-Value Work: 0.275 
  • R-Value Observed: 0.277 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.24α = 90
b = 107.73β = 90
c = 205.51γ = 90
Software Package:
Software NamePurpose
XDSdata scaling
SHARPphasing
PHENIXrefinement
XDSdata reduction
anisotropydata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-10
    Type: Initial release
  • Version 1.1: 2013-08-07
    Changes: Database references
  • Version 1.2: 2013-10-23
    Changes: Database references
  • Version 1.3: 2024-02-28
    Changes: Data collection, Database references, Derived calculations