4L0C

Crystal structure of the N-Fopmylmaleamic acid deformylase Nfo(S94A) from Pseudomonas putida S16

PDB DOI: https://doi.org/10.2210/pdb4L0C/pdb

Classification: HYDROLASE
Organism(s): Pseudomonas putida S16
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2013-05-31 Released: 2014-06-04
Deposition Author(s): Chen, D., Lu, Y., Zhang, Z., Wu, G., Xu, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.211
R-Value Work: 0.185
R-Value Observed: 0.186

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the N-Fopmylmaleamic acid deformylase Nfo from Pseudomonas putida S16

Chen, D., Lu, Y., Zhang, Z., Wu, G., Xu, P.

To be published.

Macromolecule Content

Total Structure Weight: 228.65 kDa
Atom Count: 18,024
Modelled Residue Count: 2,029
Deposited Residue Count: 2,040
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Deformylase	A, B, C, D, E A, B, C, D, E, F, G, H	255	Pseudomonas putida S16	Mutation(s): 1 Gene Names: PPS_4059
UniProt
Find proteins for F8G0M2 (Pseudomonas putida (strain DSM 28022 / S16)) Explore F8G0M2 Go to UniProtKB: F8G0M2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F8G0M2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain S [auth H] MOL2 format, chain S [auth H]	S [auth H]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain S [auth H] Interactions & Density Focus chain S [auth H]
ACY Query on ACY Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth B] SDF format, chain L [auth C] SDF format, chain M [auth D] SDF format, chain N [auth E] SDF format, chain O [auth F] SDF format, chain P [auth G] SDF format, chain Q [auth G] SDF format, chain R [auth H] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth C] MOL2 format, chain M [auth D] MOL2 format, chain N [auth E] MOL2 format, chain O [auth F] MOL2 format, chain P [auth G] MOL2 format, chain Q [auth G] MOL2 format, chain R [auth H]	I [auth A] J [auth A] K [auth B] L [auth C] M [auth D] I [auth A], J [auth A], K [auth B], L [auth C], M [auth D], N [auth E], O [auth F], P [auth G], Q [auth G], R [auth H]	ACETIC ACID C₂ H₄ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth E] Focus chain O [auth F] Focus chain P [auth G] Focus chain Q [auth G] Focus chain R [auth H] Interactions & Density Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth E] Focus chain O [auth F] Focus chain P [auth G] Focus chain Q [auth G] Focus chain R [auth H]