Download MendeleyThe crystal Structure of the N-terminal PAS domain of the F plasmid TraJ
Lu, J., Glover, J.N.M.To be published.
4KQD
The crystal Structure of the N-terminal PAS domain of the F plasmid TraJ
- PDB DOI: https://doi.org/10.2210/pdb4KQD/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-05-14 Released: 2014-07-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.178
- R-Value Work: 0.160
- R-Value Observed: 0.161
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein TraJ | 121 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: ECOK12F072, traJ |  | |
UniProt | |||||
Find proteins for P06626 (Escherichia coli (strain K12)) Explore P06626 Go to UniProtKB: P06626 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06626 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DTT Query on DTT | E [auth A] | 2,3-DIHYDROXY-1,4-DITHIOBUTANE C4 H10 O2 S2 VHJLVAABSRFDPM-IMJSIDKUSA-N |  | ||
| DTD Query on DTD | F [auth B], H [auth D] | DITHIANE DIOL C4 H8 O2 S2 YPGMOWHXEQDBBV-IMJSIDKUSA-N |  | ||
| GOL Query on GOL | G [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.178
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.228 | α = 90 |
| b = 95.228 | β = 90 |
| c = 102.041 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| SOLVE | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2014-07-02 Deposition Author(s): Lu, J., Glover, J.N.M.
Revision History (Full details and data files)
- Version 1.0: 2014-07-02
Type: Initial release - Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations
