X-ray Structure of a KijD3 in Complex with FMN and dTDP-3-amino-2,3,6-trideoxy-4-keto-3-methyl-D-glucose
4KCF
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  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 49345.62
    Molecule: FAD-dependent oxidoreductase
    Polymer: 1 Type: protein Length: 454
    Chains: A
    Organism: Actinomadura kijaniata
    Gene Name: KijD3
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  •   Source Hide
    Polymer: 1
    Scientific Name: Actinomadura kijaniata   Taxonomy   Expression System: Escherichia coli  
     
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    Identifier Details
    3M9V   X-ray Structure of a KijD3 in Complex with dTDP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AKM
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    AKM C17 H29 N3 O14 P2
    [(2R,4S,6R)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan- 2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin- 1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl- phosphoryl] hydrogen phosphate
    AKM:4KCF
    FMN
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    FMN C17 H21 N4 O9 P
    FLAVIN MONONUCLEOTIDE
    FMN:4KCF
     
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Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Holden, H.M.,  Thoden, J.B.,  Branch, M.C.,  Zimmer, A.L.,  Bruender, N.A.

    Deposition:   2013-04-24
    Release:   2013-05-22
    Last Modified (REVDAT):   2013-12-18
     
  •   Revision History    Hide
    Mouse over text for details
    2013-12-18
    Citation
    2013-05-29
    Non-polymer description
    2013-05-29
    Atom nomenclature
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.10
    R-Value: 0.177 (obs.)
    R-Free: 0.225
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 70.83 α = 90.00 
    b = 81.30 β = 90.00 
    c = 152.63 γ = 90.00