Download MendeleyCrystal Structure of the Calcium Binding Domain of CDPK3 from Plasmodium Berghei, PB000947.00
Wernimont, A.K., Loppnau, P., Lin, Y.H., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Hui, R., Mottaghi, K.To be published.
4JWQ
Crystal Structure of the Calcium Binding Domain of CDPK3 from Plasmodium Berghei, PB000947.00
- PDB DOI: https://doi.org/10.2210/pdb4JWQ/pdb
- Classification: TRANSFERASE
- Organism(s): Plasmodium berghei ANKA
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-03-27 Released: 2013-04-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.236
- R-Value Work: 0.201
- R-Value Observed: 0.203
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Calcium-dependent protein kinase | A, B [auth C] | 199 | Plasmodium berghei ANKA | Mutation(s): 0 Gene Names: PB000947.00.0, PBANKA_040820 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | G [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CA Query on CA | C [auth A], D [auth A], E [auth C], F [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.236
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 24.564 | α = 90 |
| b = 69.741 | β = 90 |
| c = 90.581 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| Blu-Ice | data collection |
| BALBES | phasing |
Entry History
Deposition Data
- Released Date: 2013-04-17 Deposition Author(s): Wernimont, A.K., Loppnau, P., Lin, Y.H., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Hui, R., Mottaghi, K., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2013-04-17
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2024-02-28
Changes: Data collection, Database references, Derived calculations, Refinement description
