Download MendeleyCrystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
Davies, C.W., Ringe, D., Petsko, G.A., Das, C.To be published.
4JKJ
Crystal Structure of the S18Y Variant of Ubiquitin Carboxy-terminal Hydrolase L1
- PDB DOI: https://doi.org/10.2210/pdb4JKJ/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2013-03-09 Released: 2014-05-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.245
- R-Value Work: 0.197
- R-Value Observed: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin carboxyl-terminal hydrolase isozyme L1 | 228 | Homo sapiens | Mutation(s): 1 Gene Names: UCHL1 EC: 3.4.19.12 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P09936 (Homo sapiens) Explore P09936 Go to UniProtKB: P09936 | |||||
PHAROS: P09936 GTEx: ENSG00000154277 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P09936 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.245
- R-Value Work: 0.197
- R-Value Observed: 0.198
- Space Group: P 4 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 109.585 | α = 90 |
| b = 109.585 | β = 90 |
| c = 79.715 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| MOLREP | phasing |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2014-05-28 Deposition Author(s): Davies, C.W., Ringe, D., Petsko, G.A., Das, C.
Revision History (Full details and data files)
- Version 1.0: 2014-05-28
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
