Download MendeleyX-ray crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase 2 from Rickettsia rickettsii
Fairman, J.W., Abendroth, J.A., Edwards, T.E., Lorimer, D.To be published.
4JGA
X-ray crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase 2 from Rickettsia rickettsii
- PDB DOI: https://doi.org/10.2210/pdb4JGA/pdb
- Classification: TRANSFERASE
- Organism(s): Rickettsia rickettsii str. 'Sheila Smith
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-02-28 Released: 2013-05-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.178
- R-Value Work: 0.148
- R-Value Observed: 0.149
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 437 | Rickettsia rickettsii str. 'Sheila Smith | Mutation(s): 0 Gene Names: A1G_06510 EC: 2.3.1.179 |  | |
UniProt | |||||
Find proteins for A0A0H3AY56 (Rickettsia rickettsii (strain Sheila Smith)) Explore A0A0H3AY56 Go to UniProtKB: A0A0H3AY56 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3AY56 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| K Query on K | C [auth A], F [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| NA Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.178
- R-Value Work: 0.148
- R-Value Observed: 0.149
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34JGA
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.17 | α = 90 |
| b = 62.74 | β = 112.08 |
| c = 95.43 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2013-05-29 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2013-05-29
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
