4JBM

Structure of murine DNA binding protein bound with ds DNA

PDB DOI: https://doi.org/10.2210/pdb4JBM/pdb
NAKB: 4JBM

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-02-19 Released: 2013-06-26
Deposition Author(s): Ru, H., Ni, X., Crowley, C., Zhao, L., Ding, W., Hung, L.-W., Shaw, N., Cheng, G., Liu, Z.-J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.22 Å
R-Value Free: 0.283
R-Value Work: 0.234
R-Value Observed: 0.237

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural basis for termination of AIM2-mediated signaling by p202

Ru, H., Ni, X., Zhao, L., Crowley, C., Ding, W., Hung, L.-W., Shaw, N., Cheng, G., Liu, Z.-J.

(2013) Cell Res 23: 855-858

PubMed: 23567559 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/cr.2013.52
Primary Citation of Related Structures:
4JBJ, 4JBK, 4JBM

Macromolecule Content

Total Structure Weight: 51.13 kDa
Atom Count: 3,625
Modelled Residue Count: 401
Deposited Residue Count: 410
Unique protein chains: 1
Unique nucleic acid chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interferon-inducible protein AIM2	A, B	193	Mus musculus	Mutation(s): 0 Gene Names: Aim2
UniProt & NIH Common Fund Data Resources
Find proteins for Q91VJ1 (Mus musculus) Explore Q91VJ1 Go to UniProtKB: Q91VJ1
IMPC: MGI:2686159
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q91VJ1
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(GPGPCPGPCPGPCPGPCPGPCPC)-3')	C [auth T], D [auth R]	12	N/A
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.22 Å
R-Value Free: 0.283
R-Value Work: 0.234
R-Value Observed: 0.237
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.02	α = 90
b = 39.12	β = 110.64
c = 137.877	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASES	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-06-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-06-26
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.