Download MendeleyCrystal structure of 8-amino-7-oxononanoate synthase (bioF) from Francisella tularensis.
Newcomb, W., Niedzialkowska, E., Porebski, P.J., Grimshaw, S., Anderson, W.F., Minor, W.To be published.
4IW7
Crystal structure of 8-amino-7-oxononanoate synthase (bioF) from Francisella tularensis.
- PDB DOI: https://doi.org/10.2210/pdb4IW7/pdb
- Classification: TRANSFERASE
- Organism(s): Francisella tularensis subsp. tularensis SCHU S4
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-01-23 Released: 2013-02-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.238
- R-Value Work: 0.186
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 8-amino-7-oxononanoate synthase | 399 | Francisella tularensis subsp. tularensis SCHU S4 | Mutation(s): 0 Gene Names: bioF, FTT0936c, FTT_0936c EC: 2.3.1.47 |  | |
UniProt | |||||
Find proteins for Q5NGB3 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NGB3 Go to UniProtKB: Q5NGB3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5NGB3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.238
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: H 3 2
- Diffraction Data: https://doi.org/10.18430/M3V30Q
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.486 | α = 90 |
| b = 113.486 | β = 90 |
| c = 158.128 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | phasing |
| MOLREP | phasing |
| REFMAC | refinement |
| Coot | model building |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2013-02-13 Deposition Author(s): Newcomb, W., Niedzialkowska, E., Porebski, P.J., Grimshaw, S., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2013-02-13
Type: Initial release - Version 1.1: 2014-11-12
Changes: Structure summary - Version 1.2: 2017-11-15
Changes: Refinement description - Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2023-09-20
Changes: Data collection, Refinement description
