4IHA

Crystal structure of rice DWARF14 (D14) in complex with a GR24 hydrolysis intermediate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.

Zhao, L.H.Zhou, X.E.Wu, Z.S.Yi, W.Xu, Y.Li, S.Xu, T.H.Liu, Y.Chen, R.Z.Kovach, A.Kang, Y.Hou, L.He, Y.Xie, C.Song, W.Zhong, D.Xu, Y.Wang, Y.Li, J.Zhang, C.Melcher, K.Xu, H.E.

(2013) Cell Res 23: 436-439


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dwarf 88 esterase
A, B
268Oryza sativa Japonica GroupMutation(s): 0 
Gene Names: D14D88LOC_Os03g10620Os03g0203200
UniProt
Find proteins for Q10QA5 (Oryza sativa subsp. japonica)
Explore Q10QA5 
Go to UniProtKB:  Q10QA5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ10QA5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
OPL
Query on OPL

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
(2R,3R)-2,4,4-trihydroxy-3-methylbutanal
C5 H10 O4
NTSABUYTFOFFJR-DMTCNVIQSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.188α = 90
b = 88.729β = 90
c = 118.315γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-01-23
    Type: Initial release
  • Version 1.1: 2013-10-23
    Changes: Database references
  • Version 1.2: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description