4IBO

Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.152 
  • R-Value Observed: 0.154 

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This is version 1.1 of the entry. See complete history. 


Literature

Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)

Vetting, M.W., Bouvier, J.T., Groninger-Poe, F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gluconate dehydrogenase
A, B, C, D
271Agrobacterium fabrum str. C58Mutation(s): 0 
Gene Names: Atu1407
UniProt
Find proteins for A9CJ43 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Explore A9CJ43 
Go to UniProtKB:  A9CJ43
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA9CJ43
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.152 
  • R-Value Observed: 0.154 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 135.783α = 90
b = 135.783β = 90
c = 126.165γ = 120
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
BALBESphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-12-26
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description