Structural studies of ornithine carbamoyltransferase from various pathogens
Shabalin, I.G., Winsor, J., Grimshaw, S., Osinski, T., Chordia, M.D., Anderson, W.F., Minor, W.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ornithine carbamoyltransferase | 358 | Vibrio vulnificus CMCP6 | Mutation(s): 0  Gene Names: argF, VV1_1466 EC: 2.1.3.3 | ||
UniProt | |||||
Find proteins for Q8DCF5 (Vibrio vulnificus (strain CMCP6)) Explore Q8DCF5  Go to UniProtKB:  Q8DCF5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8DCF5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PE5 Query on PE5 | EA [auth C], F [auth A], Z [auth B] | 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL C18 H38 O9 CUDPPTPIUWYGFI-UHFFFAOYSA-N | |||
CP Query on CP | DA [auth C], E [auth A], R [auth B] | PHOSPHORIC ACID MONO(FORMAMIDE)ESTER C H4 N O5 P FFQKYPRQEYGKAF-UHFFFAOYSA-N | |||
NVA Query on NVA | BA [auth C], D [auth A], Q [auth B] | NORVALINE C5 H11 N O2 SNDPXSYFESPGGJ-BYPYZUCNSA-N | |||
PEG Query on PEG | AA [auth B] FA [auth C] G [auth A] GA [auth C] H [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
CL Query on CL | CA [auth C] IA [auth C] J [auth A] N [auth A] T [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 74.262 | α = 90 |
b = 80.911 | β = 90 |
c = 152.733 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-3000 | data collection |
HKL-3000 | phasing |
MOLREP | phasing |
REFMAC | refinement |
Coot | model building |
HKL-3000 | data reduction |
HKL-3000 | data scaling |