4GOS
Crystal structure of human B7-H4 IgV-like domain
- PDB DOI: https://doi.org/10.2210/pdb4GOS/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Drosophila melanogaster
- Mutation(s): No 
- Deposited: 2012-08-20 Released: 2012-09-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.59 Å
- R-Value Free: 0.192 
- R-Value Work: 0.174 
- R-Value Observed: 0.175 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
V-set domain-containing T-cell activation inhibitor 1 | 125 | Homo sapiens | Mutation(s): 0  Gene Names: B7-H4, B7H4, B7S1, B7x, UNQ659/PRO1291, VTCN1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q7Z7D3 (Homo sapiens) Explore Q7Z7D3  Go to UniProtKB:  Q7Z7D3 | |||||
PHAROS:  Q7Z7D3 GTEx:  ENSG00000134258  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7Z7D3 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.59 Å
- R-Value Free: 0.192 
- R-Value Work: 0.174 
- R-Value Observed: 0.175 
- Space Group: P 43 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 46.5 | α = 90 |
b = 46.5 | β = 90 |
c = 115.77 | γ = 90 |
Software Name | Purpose |
---|---|
SCALA | data scaling |
SHELX | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CBASS | data collection |
MOSFLM | data reduction |
SHELXD | phasing |
Entry History 
Deposition Data
- Released Date: 2012-09-12  Deposition Author(s): Vigdorovich, V., Ramagopal, U., Bhosle, R., Toro, R., Nathenson, S.G., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Revision History (Full details and data files)
- Version 1.0: 2012-09-12
Type: Initial release - Version 1.1: 2016-11-16
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary