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Pavletich, N.P., Fan, J.To be published.
4GNX
Structure of U. maydis Replication protein A bound to ssDNA
- PDB DOI: https://doi.org/10.2210/pdb4GNX/pdb
- NAKB: 4GNX
- Classification: DNA BINDING PROTEIN/DNA
- Organism(s): Ustilago maydis 521, synthetic construct
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2012-08-17 Released: 2013-02-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.278
- R-Value Work: 0.219
- R-Value Observed: 0.222
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative uncharacterized protein | A, D [auth X] | 114 | Ustilago maydis 521 | Mutation(s): 0 Gene Names: UM04165.1 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative uncharacterized protein | B, E [auth Y] | 136 | Ustilago maydis 521 | Mutation(s): 0 Gene Names: UM02579.1 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative uncharacterized protein | C, F [auth Z] | 444 | Ustilago maydis 521 | Mutation(s): 0 Gene Names: UM05156.1 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (25-MER) | G [auth K], H [auth L] | 62 | synthetic construct |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | I [auth C], J [auth Z] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.278
- R-Value Work: 0.219
- R-Value Observed: 0.222
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.1 | α = 90 |
| b = 91.4 | β = 97.8 |
| c = 114.6 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| DENZO | data reduction |
Entry History
Deposition Data
- Released Date: 2013-02-20 Deposition Author(s): Pavletich, N.P., Fan, J.
Revision History (Full details and data files)
- Version 1.0: 2013-02-20
Type: Initial release - Version 1.1: 2013-07-24
Changes: Structure summary
