4F8X
Penicillium canescens endo-1,4-beta-xylanase XylE
- PDB DOI: https://doi.org/10.2210/pdb4F8X/pdb
- Classification: HYDROLASE
- Organism(s): Penicillium canescens
- Expression System: Penicillium canescens
- Mutation(s): No
- Deposited: 2012-05-18 Released: 2012-05-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.170
- R-Value Work: 0.146
- R-Value Observed: 0.147
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endo-1,4-beta-xylanase | 335 | Penicillium canescens | Mutation(s): 0 Gene Names: xylE EC: 3.2.1.8 |  | |
UniProt | |||||
Find proteins for C3VEV9 (Penicillium canescens) Explore C3VEV9 Go to UniProtKB: C3VEV9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C3VEV9 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 5 |  | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan: G89225LT GlyCosmos: G89225LT GlyGen: G89225LT | |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.170
- R-Value Work: 0.146
- R-Value Observed: 0.147
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.23 | α = 90 |
| b = 60.29 | β = 115.2 |
| c = 55.62 | γ = 90 |
| Software Name | Purpose |
|---|---|
| AUTOMAR | data collection |
| BALBES | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2012-05-30 Deposition Author(s): Polyakov, K.M., Trofimov, A.A., Fedorova, T.V., Koroleva, O.V., Maisuradze, I.G., Chulkin, A.M., Vavilova, E.A., Benevolenskii, S.V.
Revision History (Full details and data files)
- Version 1.0: 2012-05-30
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-13
Changes: Data collection, Database references, Refinement description, Structure summary
