Download MendeleyCrystal structure of the RHO GTPASE binding domain of Plexin B2
Guan, X., Wang, H., Tempel, W., Tong, Y., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H.To be published.
4E71
Crystal structure of the RHO GTPASE binding domain of Plexin B2
- PDB DOI: https://doi.org/10.2210/pdb4E71/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2012-03-16 Released: 2012-03-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.26 Å
- R-Value Free: 0.285
- R-Value Work: 0.244
- R-Value Observed: 0.246
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Plexin-B2 | 111 | Homo sapiens | Mutation(s): 0 Gene Names: PLXNB2, KIAA0315 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15031 (Homo sapiens) Explore O15031 Go to UniProtKB: O15031 | |||||
PHAROS: O15031 GTEx: ENSG00000196576 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O15031 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | B [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.26 Å
- R-Value Free: 0.285
- R-Value Work: 0.244
- R-Value Observed: 0.246
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.38 | α = 90 |
| b = 48.38 | β = 90 |
| c = 157.36 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| BUSTER-TNT | refinement |
| PDB_EXTRACT | data extraction |
| BUSTER | refinement |
Entry History
Deposition Data
- Released Date: 2012-03-28 Deposition Author(s): Guan, X., Wang, H., Tempel, W., Tong, Y., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Park, H., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2012-03-28
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
