Download MendeleyX-ray structure of the Serratia marcescens endonuclease at 0.95 A resolution
Lashkov, A.A., Balaev, V.V., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.To be published.
4E3Y
X-ray structure of the Serratia marcescens endonuclease at 0.95 A resolution
- PDB DOI: https://doi.org/10.2210/pdb4E3Y/pdb
- Classification: HYDROLASE
- Organism(s): Serratia marcescens
- Mutation(s): No
- Deposited: 2012-03-11 Released: 2013-05-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.95 Å
- R-Value Free: 0.145
- R-Value Work: 0.130
- R-Value Observed: 0.131
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nuclease | 245 | Serratia marcescens | Mutation(s): 0 EC: 3.1.30.2 |  | |
UniProt | |||||
Find proteins for P13717 (Serratia marcescens) Explore P13717 Go to UniProtKB: P13717 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13717 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | E [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | G [auth B], H [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A], F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.95 Å
- R-Value Free: 0.145
- R-Value Work: 0.130
- R-Value Observed: 0.131
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 106.265 | α = 90 |
| b = 73.418 | β = 90 |
| c = 67.924 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2013-05-08 Deposition Author(s): Lashkov, A.A., Balaev, V.V., Gabdoulkhakov, A.G., Betzel, C., Mikhailov, A.M.
Revision History (Full details and data files)
- Version 1.0: 2013-05-08
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
