Download MendeleyPrecorrin-4 C(11)-methyltransferase from Clostridium difficile
Osipiuk, J., Nocek, B., Makowska-Grzyska, M., Papazisi, L., Anderson, W.F., Joachimiak, A.To be published.
4E16
Precorrin-4 C(11)-methyltransferase from Clostridium difficile
- PDB DOI: https://doi.org/10.2210/pdb4E16/pdb
- Classification: TRANSFERASE
- Organism(s): Clostridioides difficile 630
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-03-05 Released: 2012-03-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.49 Å
- R-Value Free: 0.258
- R-Value Work: 0.204
- R-Value Observed: 0.207
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| precorrin-4 C(11)-methyltransferase | 253 | Clostridioides difficile 630 | Mutation(s): 0 Gene Names: cbiF, CD630_34260 EC: 2.1.1 |  | |
UniProt | |||||
Find proteins for Q180S3 (Clostridioides difficile (strain 630)) Explore Q180S3 Go to UniProtKB: Q180S3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q180S3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.49 Å
- R-Value Free: 0.258
- R-Value Work: 0.204
- R-Value Observed: 0.207
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.18430/M34E16
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.245 | α = 90 |
| b = 60.245 | β = 90 |
| c = 147.955 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2012-03-14 Deposition Author(s): Osipiuk, J., Nocek, B., Makowska-Grzyska, M., Papazisi, L., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2012-03-14
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Refinement description
