Download MendeleyCrystal structure of PfkB protein from Polaromonas sp. JS666
Agarwal, R., Almo, S.C., Swaminathan, S.To be published.
4DU5
Crystal structure of PfkB protein from Polaromonas sp. JS666
- PDB DOI: https://doi.org/10.2210/pdb4DU5/pdb
- Classification: TRANSFERASE
- Organism(s): Polaromonas sp. JS666
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-02-21 Released: 2012-03-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.296
- R-Value Work: 0.226
- R-Value Observed: 0.229
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PfkB | 336 | Polaromonas sp. JS666 | Mutation(s): 0 Gene Names: Bpro_1737 |  | |
UniProt | |||||
Find proteins for Q12CR9 (Polaromonas sp. (strain JS666 / ATCC BAA-500)) Explore Q12CR9 Go to UniProtKB: Q12CR9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q12CR9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | E [auth A], F [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.296
- R-Value Work: 0.226
- R-Value Observed: 0.229
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.923 | α = 90 |
| b = 83.084 | β = 90 |
| c = 196.202 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| MOLREP | phasing |
| Coot | model building |
| ARP | model building |
| AutoSol | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-03-21 Deposition Author(s): Agarwal, R., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hellerich, B., Kar, A., Lafleur, J., Siedel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2012-03-21
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-12-06
Changes: Data collection
