4DBM
Aplysia californica-AChBP in complex with triazole 18
- PDB DOI: https://doi.org/10.2210/pdb4DBM/pdb
- Classification: ACETYLCHOLINE-BINDING PROTEIN
- Organism(s): Aplysia californica
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2012-01-16 Released: 2012-03-21 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.252 
- R-Value Work: 0.194 
- R-Value Observed: 0.196 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Soluble acetylcholine receptor | 230 | Aplysia californica | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q8WSF8 (Aplysia californica) Explore Q8WSF8  Go to UniProtKB:  Q8WSF8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8WSF8 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | F | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
0J0 Query on 0J0 | H [auth A], I [auth B], J [auth C], K [auth D], L [auth E] | (3-exo)-8,8-dimethyl-3-(4-{[(1-methyl-2-oxo-1,2-dihydroquinolin-4-yl)oxy]methyl}-1H-1,2,3-triazol-1-yl)-8-azoniabicyclo[3.2.1]octane C22 H28 N5 O2 YGBMUEMPFNRGJC-NNZMDNLPSA-N | |||
NAG Query on NAG | G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.252 
- R-Value Work: 0.194 
- R-Value Observed: 0.196 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 88.338 | α = 90 |
b = 115.097 | β = 90 |
c = 131.379 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
ccp4: | model building |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
CCP4: | phasing |
Entry History 
Deposition Data
- Released Date: 2012-03-21  Deposition Author(s): Nemecz, A., Yamauchi, J.G., Kim, C.
Revision History (Full details and data files)
- Version 1.0: 2012-03-21
Type: Initial release - Version 1.1: 2012-06-13
Changes: Database references - Version 1.2: 2018-01-31
Changes: Advisory, Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-09-13
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary