4D63
Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, avirulent form complexed with 6-sialyllactose.
- PDB DOI: https://doi.org/10.2210/pdb4D63/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Avirulent turkey hemorrhagic enteritis virus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-11-08 Released: 2015-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.215
- R-Value Work: 0.177
- R-Value Observed: 0.179
This is version 1.2 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FIBER KNOB DOMAIN | 187 | Avirulent turkey hemorrhagic enteritis virus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q2TLC1 (Avirulent turkey hemorrhagic enteritis virus) Explore Q2TLC1 Go to UniProtKB: Q2TLC1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2TLC1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SIA Query on SIA | B [auth A] | N-acetyl-alpha-neuraminic acid C11 H19 N O9 SQVRNKJHWKZAKO-YRMXFSIDSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.215
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: I 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.46 | α = 90 |
| b = 98.46 | β = 90 |
| c = 98.46 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2015-10-14 Deposition Author(s): Singh, A.K., van Raaij, M.J.
Revision History (Full details and data files)
- Version 1.0: 2015-10-14
Type: Initial release - Version 1.1: 2018-01-17
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary
