Ultra High Resolution Dickerson-Drew dodecamer B-DNA with 5-Hydroxymethylcystosine Modification
DOI:10.2210/pdb4c5x/pdb   NDB ID: NA2706
4C5X
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7411.20
    Molecule: 5'-D(CP*GP*CP*GP*AP*AP*TP*TP*5HCP*GP*CP*GP)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: A, B
    Fragment: DICKERSON-DREW SEQUENCE DODECAMER
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4C63   ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5-METHYLCYSTOSINE MODIFICATION 
    4C64   ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5HC
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    5HC C10 H16 N3 O8 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2706
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   McDonough, M.,  El-Sagheer, A.H.,  Brown, T.,  Schofield, C.J.

    Deposition:   2013-09-16
    Release:   2013-10-02
    Last Modified (REVDAT):   2014-02-12
     
  •   Revision History    Hide
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    2014-02-12
    Citation
    2013-12-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.30
    R-Value: 0.145 (obs.)
    R-Free: 0.173
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.30 α = 90.00 
    b = 40.27 β = 90.00 
    c = 64.88 γ = 90.00