4C0D

Structure of the NOT module of the human CCR4-NOT complex (CNOT1-CNOT2-CNOT3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.226 

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This is version 1.4 of the entry. See complete history


Literature

Structure and Assembly of the not Module of the Human Ccr4-not Complex

Boland, A.Chen, Y.Raisch, T.Jonas, S.Kuzuoglu-Ozturk, D.Wohlbold, L.Weichenrieder, O.Izaurralde, E.

(2013) Nat Struct Mol Biol 20: 1289

  • DOI: https://doi.org/10.1038/nsmb.2681
  • Primary Citation of Related Structures:  
    4C0D, 4C0E, 4C0F, 4C0G

  • PubMed Abstract: 

    The CCR4-NOT deadenylase complex is a master regulator of translation and mRNA stability. Its NOT module orchestrates recruitment of the catalytic subunits to target mRNAs. We report the crystal structure of the human NOT module formed by the CNOT1, CNOT2 and CNOT3 C-terminal (-C) regions. CNOT1-C provides a rigid scaffold consisting of two perpendicular stacks of HEAT-like repeats. CNOT2-C and CNOT3-C heterodimerize through their SH3-like NOT-box domains. The heterodimer is stabilized and tightly anchored to the surface of CNOT1 through an unexpected intertwined arrangement of peptide regions lacking defined secondary structure. These assembly peptides mold onto their respective binding surfaces and form extensive interfaces. Mutagenesis of individual interfaces and perturbation of endogenous protein ratios cause defects in complex assembly and mRNA decay. Our studies provide a structural framework for understanding the recruitment of the CCR4-NOT complex to mRNA targets.


  • Organizational Affiliation

    1] Department of Biochemistry, Max Planck Institute for Developmental Biology, Tübingen, Germany. [2].


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1812Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for A5YKK6 (Homo sapiens)
Explore A5YKK6 
Go to UniProtKB:  A5YKK6
PHAROS:  A5YKK6
GTEx:  ENSG00000125107 
Entity Groups  
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UniProt GroupA5YKK6
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2201Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZN8 (Homo sapiens)
Explore Q9NZN8 
Go to UniProtKB:  Q9NZN8
PHAROS:  Q9NZN8
GTEx:  ENSG00000111596 
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UniProt GroupQ9NZN8
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3166Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O75175 (Homo sapiens)
Explore O75175 
Go to UniProtKB:  O75175
PHAROS:  O75175
GTEx:  ENSG00000088038 
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UniProt GroupO75175
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.226 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.57α = 90
b = 165.92β = 90
c = 78.83γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-10-09
    Type: Initial release
  • Version 1.1: 2013-10-16
    Changes: Database references
  • Version 1.2: 2013-10-23
    Changes: Database references
  • Version 1.3: 2013-11-20
    Changes: Database references
  • Version 1.4: 2023-12-20
    Changes: Data collection, Database references, Other, Refinement description