Download MendeleyStructure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii.
Abendroth, J., Lukacs, C.M., Lorimer, D.D., Edwards, T.E.To be published.
4YL5
Structure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb4YL5/pdb
- Classification: TRANSFERASE
- Organism(s): Acinetobacter baumannii IS-123
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-03-04 Released: 2015-04-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.177
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative phosphomethylpyrimidine kinase | 263 | Acinetobacter baumannii IS-123 | Mutation(s): 0 Gene Names: ACINIS123_0279 |  | |
UniProt | |||||
Find proteins for A0A0J9X285 (Acinetobacter baumannii IS-123) Explore A0A0J9X285 Go to UniProtKB: A0A0J9X285 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0J9X285 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.177
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M34YL5
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.82 | α = 90 |
| b = 108.1 | β = 90 |
| c = 88.88 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| BALBES | phasing |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2015-04-01 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2015-04-01
Type: Initial release - Version 1.1: 2017-11-22
Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Refinement description
