4XOE

Crystal structure of a FimH*DsG complex from E.coli F18 with bound heptyl alpha-D-mannopyrannoside


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.151 
  • R-Value Observed: 0.152 

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Ligand Structure Quality Assessment 


This is version 2.1 of the entry. See complete history


Literature

Catch-bond mechanism of the bacterial adhesin FimH.

Sauer, M.M.Jakob, R.P.Eras, J.Baday, S.Eris, D.Navarra, G.Berneche, S.Ernst, B.Maier, T.Glockshuber, R.

(2016) Nat Commun 7: 10738-10738

  • DOI: https://doi.org/10.1038/ncomms10738
  • Primary Citation of Related Structures:  
    4XO8, 4XO9, 4XOA, 4XOB, 4XOC, 4XOD, 4XOE

  • PubMed Abstract: 

    Ligand-receptor interactions that are reinforced by mechanical stress, so-called catch-bonds, play a major role in cell-cell adhesion. They critically contribute to widespread urinary tract infections by pathogenic Escherichia coli strains. These pathogens attach to host epithelia via the adhesin FimH, a two-domain protein at the tip of type I pili recognizing terminal mannoses on epithelial glycoproteins. Here we establish peptide-complemented FimH as a model system for fimbrial FimH function. We reveal a three-state mechanism of FimH catch-bond formation based on crystal structures of all states, kinetic analysis of ligand interaction and molecular dynamics simulations. In the absence of tensile force, the FimH pilin domain allosterically accelerates spontaneous ligand dissociation from the FimH lectin domain by 100,000-fold, resulting in weak affinity. Separation of the FimH domains under stress abolishes allosteric interplay and increases the affinity of the lectin domain. Cell tracking demonstrates that rapid ligand dissociation from FimH supports motility of piliated E. coli on mannosylated surfaces in the absence of shear force.


  • Organizational Affiliation

    Institute of Molecular Biology and Biophysics, Department of Biology, ETH, Zurich, Otto-Stern-Weg 5, 8093 Zurich, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FimH protein279Escherichia coli 536Mutation(s): 0 
Gene Names: ECP_4655
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
FimG protein14Escherichia coli 536Mutation(s): 0 
Gene Names: ECP_4654
UniProt
Find proteins for A0A140UH97 (Escherichia coli O6:K15:H31 (strain 536 / UPEC))
Explore A0A140UH97 
Go to UniProtKB:  A0A140UH97
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A140UH97
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
KGM
Query on KGM

Download Ideal Coordinates CCD File 
C [auth A]heptyl alpha-D-mannopyranoside
C13 H26 O6
NIDYWHLDTIVRJT-BNDIWNMDSA-N
CAC
Query on CAC

Download Ideal Coordinates CCD File 
D [auth A]CACODYLATE ION
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Binding Affinity Annotations 
IDSourceBinding Affinity
KGM Binding MOAD:  4XOE Kd: 9900 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.151 
  • R-Value Observed: 0.152 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 128.36α = 90
b = 128.36β = 90
c = 128.36γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-01-27
    Type: Initial release
  • Version 1.1: 2016-03-16
    Changes: Database references
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Derived calculations, Structure summary
  • Version 2.1: 2024-01-10
    Changes: Data collection, Database references, Refinement description, Structure summary