4WED

Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.167 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti

Shabalin, I.G.Handing, K.B.Minor, W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter, periplasmic solute-binding protein525Sinorhizobium meliloti 1021Mutation(s): 0 
Gene Names: SMa1651
UniProt
Find proteins for Q92YH7 (Rhizobium meliloti (strain 1021))
Explore Q92YH7 
Go to UniProtKB:  Q92YH7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92YH7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.167 
  • Space Group: P 31
  • Diffraction Data: https://doi.org/10.18430/M3KG69
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.327α = 90
b = 57.327β = 90
c = 132.063γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
DMphasing
MLPHAREphasing
SHELXphasing
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2014-09-24
    Type: Initial release
  • Version 1.1: 2015-08-26
    Changes: Data collection
  • Version 1.2: 2017-11-22
    Changes: Derived calculations, Refinement description
  • Version 1.3: 2019-11-27
    Changes: Author supporting evidence
  • Version 1.4: 2022-04-13
    Changes: Database references, Derived calculations, Structure summary
  • Version 1.5: 2023-12-27
    Changes: Data collection