4W8N
The crystal structure of hemagglutinin from a swine influenza virus (A/swine/Missouri/2124514/2006)
- PDB DOI: https://doi.org/10.2210/pdb4W8N/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/swine/Missouri/2124514/2006(H2N3))
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2014-08-25 Released: 2015-02-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.262
- R-Value Work: 0.233
- R-Value Observed: 0.234
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemagglutinin | 330 | Influenza A virus (A/swine/Missouri/2124514/2006(H2N3)) | Mutation(s): 0 Gene Names: HA |  | |
UniProt | |||||
Find proteins for A9YN66 (Influenza A virus) Explore A9YN66 Go to UniProtKB: A9YN66 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9YN66 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemagglutinin | 179 | Influenza A virus (A/swine/Missouri/2124514/2006(H2N3)) | Mutation(s): 0 Gene Names: HA |  | |
UniProt | |||||
Find proteins for A9YN66 (Influenza A virus) Explore A9YN66 Go to UniProtKB: A9YN66 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9YN66 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | G [auth A] H [auth A] I [auth A] J [auth B] K [auth C] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.262
- R-Value Work: 0.233
- R-Value Observed: 0.234
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.291 | α = 90 |
| b = 160.028 | β = 90 |
| c = 170.602 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2015-02-11 Deposition Author(s): Yang, H., Carney, P.J., Tumpey, T.M., Stevens, J.
Revision History (Full details and data files)
- Version 1.0: 2015-02-11
Type: Initial release - Version 1.1: 2015-03-04
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary - Version 2.1: 2023-12-27
Changes: Advisory, Data collection, Database references, Structure summary
