4V84

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.228 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.

Zhu, J., Korostelev, A., Costantino, D.A., Donohue, J.P., Noller, H.F., Kieft, J.S.

(2011) Proc Natl Acad Sci U S A 108: 1839-1844

  • DOI: https://doi.org/10.1073/pnas.1018582108
  • Primary Citation of Related Structures:  
    4V83, 4V84

  • PubMed Abstract: 

    Internal ribosome entry site (IRES) RNAs are elements of viral or cellular mRNAs that bypass steps of canonical eukaryotic cap-dependent translation initiation. Understanding of the structural basis of IRES mechanisms is limited, partially due to a lack of high-resolution structures of IRES RNAs bound to their cellular targets. Prompted by the universal phylogenetic conservation of the ribosomal P site, we solved the crystal structures of proposed P site binding domains from two intergenic region IRES RNAs bound to bacterial 70S ribosomes. The structures show that these IRES domains nearly perfectly mimic a tRNA • mRNA interaction. However, there are clear differences in the global shape and position of this IRES domain in the intersubunit space compared to those of tRNA, supporting a mechanism for IRES action that invokes hybrid state mimicry to drive a noncanonical mode of translocation. These structures suggest how relatively small structured RNAs can manipulate complex biological machines.

    • Organizational Affiliation: 

    Center for Molecular Biology of RNA and Department of Molecular, Cell and Developmental Biology, Sinsheimer Labs, University of California, Santa Cruz, CA 95064, USA.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2B [auth AB],
CB		234Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3C [auth AC],
DB [auth CC]		206Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4D [auth AD],
EB [auth CD]		208Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5E [auth AE],
FB [auth CE]		151Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6F [auth AF],
GB [auth CF]		101Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7G [auth AG],
HB [auth CG]		155Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8H [auth AH],
IB [auth CH]		138Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9I [auth AI],
JB [auth CI]		127Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10J [auth AJ],
KB [auth CJ]		98Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11K [auth AK],
LB [auth CK]		119Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12L [auth AL],
MB [auth CL]		124Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13M [auth AM],
NB [auth CM]		116Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZN [auth AN],
OB [auth CN]		60Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15O [auth AO],
PB [auth CO]		88Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16P [auth AP],
QB [auth CP]		83Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17Q [auth AQ],
RB [auth CQ]		99Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18R [auth AR],
SB [auth CR]		70Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19S [auth AS],
TB [auth CS]		78Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20T [auth AT],
UB [auth CT]		99Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein ThxU [auth AU],
VB [auth CU]		24Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2Y [auth BC],
ZB [auth DC]		271Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3AC [auth DD],
Z [auth BD]		204Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4AA [auth BE],
BC [auth DE]		202Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5BA [auth BF],
CC [auth DF]		181Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6CA [auth BG],
DC [auth DG]		159Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9DA [auth BH],
EC [auth DH]		145Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10EA [auth BI],
FC [auth DI]		65Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13FA [auth BJ],
GC [auth DJ]		137Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14GA [auth BK],
HC [auth DK]		122Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15HA [auth BL],
IC [auth DL]		146Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16IA [auth BM],
JC [auth DM]		136Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17JA [auth BN],
KC [auth DN]		117Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18KA [auth BO],
LC [auth DO]		98Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19LA [auth BP],
MC [auth DP]		137Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20MA [auth BQ],
NC [auth DQ]		116Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21NA [auth BR],
OC [auth DR]		101Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22OA [auth BS],
PC [auth DS]		112Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23PA [auth BT],
QC [auth DT]		92Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24QA [auth BU],
RC [auth DU]		100Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25RA [auth BV],
SC [auth DV]		188Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27SA [auth BW],
TC [auth DW]		76Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28TA [auth BX],
UC [auth DX]		88Thermus thermophilus HB27Mutation(s): 0 
UniProt
Find proteins for Q72G84 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
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UniProt GroupQ72G84
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29UA [auth BY],
VC [auth DY]		62Thermus thermophilus HB27Mutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30VA [auth BZ],
WC [auth DZ]		59Thermus thermophilus HB27Mutation(s): 0 
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UniProt GroupQ72I22
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31WA [auth B1],
XC [auth D1]		30Thermus thermophilus HB27Mutation(s): 0 
UniProt
Find proteins for Q72JR0 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
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UniProt GroupQ72JR0
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32XA [auth B2],
YC [auth D2]		52Thermus thermophilus HB27Mutation(s): 0 
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UniProt GroupP62652
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33YA [auth B3],
ZC [auth D3]		44Thermus thermophilus HB27Mutation(s): 0 
UniProt
Find proteins for Q72GW3 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
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UniProt GroupQ72GW3
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34AD [auth D4],
ZA [auth B4]		48Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35AB [auth B5],
BD [auth D5]		63Thermus thermophilus HB27Mutation(s): 0 
UniProt
Find proteins for Q72L77 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
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Entity ID: 1
MoleculeChains LengthOrganismImage
ribosomal RNA 16SA [auth AA],
BB [auth CA]		1,506Thermus thermophilus HB27
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Entity ID: 22
MoleculeChains LengthOrganismImage
RNA (34-MER)V [auth AV],
WB [auth CV]		43Thermus thermophilus HB27
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Entity ID: 23
MoleculeChains LengthOrganismImage
23S ribosomal RNAW [auth BA],
XB [auth DA]		2,879Thermus thermophilus HB27
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Entity ID: 24
MoleculeChains LengthOrganismImage
5S ribosomal RNAX [auth BB],
YB [auth DB]		119Thermus thermophilus HB27
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
JJ [auth AD],
LFA [auth CD],
LJ [auth AN],
MFA [auth CN]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AAA [auth B2]
ABA [auth CA]
ACA [auth CA]
ADA [auth CA]
AE [auth AA]
AAA [auth B2],
ABA [auth CA],
ACA [auth CA],
ADA [auth CA],
AE [auth AA],
AEA [auth CA],
AF [auth AA],
AFA [auth CA],
AG [auth AA],
AGA [auth DA],
AH [auth AA],
AHA [auth DA],
AI [auth AA],
AIA [auth DA],
AJ [auth AA],
AJA [auth DA],
AK [auth BA],
AKA [auth DA],
AL [auth BA],
ALA [auth DA],
AM [auth BA],
AMA [auth DA],
AN [auth BA],
ANA [auth DA],
AO [auth BA],
AOA [auth DA],
AP [auth BA],
APA [auth DA],
AQ [auth BA],
AQA [auth DA],
AR [auth BA],
ARA [auth DA],
AS [auth BA],
ASA [auth DA],
AT [auth BA],
ATA [auth DA],
AU [auth BA],
AUA [auth DA],
AV [auth BA],
AVA [auth DA],
AW [auth BA],
AWA [auth DA],
AX [auth BA],
AXA [auth DE],
AY [auth BA],
AZ [auth BA],
BAA [auth CA],
BBA [auth CA],
BCA [auth CA],
BDA [auth CA],
BE [auth AA],
BEA [auth CA],
BF [auth AA],
BFA [auth CA],
BG [auth AA],
BGA [auth DA],
BH [auth AA],
BHA [auth DA],
BI [auth AA],
BIA [auth DA],
BJ [auth AA],
BJA [auth DA],
BK [auth BA],
BKA [auth DA],
BL [auth BA],
BLA [auth DA],
BM [auth BA],
BMA [auth DA],
BN [auth BA],
BNA [auth DA],
BO [auth BA],
BOA [auth DA],
BP [auth BA],
BPA [auth DA],
BQ [auth BA],
BQA [auth DA],
BR [auth BA],
BRA [auth DA],
BS [auth BA],
BSA [auth DA],
BT [auth BA],
BTA [auth DA],
BU [auth BA],
BUA [auth DA],
BV [auth BA],
BVA [auth DA],
BW [auth BA],
BWA [auth DA],
BX [auth BA],
BXA [auth DG],
BY [auth BA],
BZ [auth BA],
CAA [auth CA],
CBA [auth CA],
CCA [auth CA],
CD [auth AA],
CDA [auth CA],
CE [auth AA],
CEA [auth CA],
CF [auth AA],
CFA [auth CA],
CG [auth AA],
CGA [auth DA],
CH [auth AA],
CHA [auth DA],
CI [auth AA],
CIA [auth DA],
CJ [auth AA],
CJA [auth DA],
CK [auth BA],
CKA [auth DA],
CL [auth BA],
CLA [auth DA],
CM [auth BA],
CMA [auth DA],
CN [auth BA],
CNA [auth DA],
CO [auth BA],
COA [auth DA],
CP [auth BA],
CPA [auth DA],
CQ [auth BA],
CQA [auth DA],
CR [auth BA],
CRA [auth DA],
CS [auth BA],
CSA [auth DA],
CT [auth BA],
CTA [auth DA],
CU [auth BA],
CUA [auth DA],
CV [auth BA],
CVA [auth DA],
CW [auth BA],
CWA [auth DA],
CX [auth BA],
CXA [auth D2],
CY [auth BA],
CZ [auth BA],
DAA [auth CA],
DBA [auth CA],
DCA [auth CA],
DD [auth AA],
DDA [auth CA],
DE [auth AA],
DEA [auth CA],
DF [auth AA],
DFA [auth CA],
DG [auth AA],
DGA [auth DA],
DH [auth AA],
DHA [auth DA],
DI [auth AA],
DIA [auth DA],
DJ [auth AA],
DJA [auth DA],
DK [auth BA],
DKA [auth DA],
DL [auth BA],
DLA [auth DA],
DM [auth BA],
DMA [auth DA],
DN [auth BA],
DNA [auth DA],
DO [auth BA],
DOA [auth DA],
DP [auth BA],
DPA [auth DA],
DQ [auth BA],
DQA [auth DA],
DR [auth BA],
DRA [auth DA],
DS [auth BA],
DSA [auth DA],
DT [auth BA],
DTA [auth DA],
DU [auth BA],
DUA [auth DA],
DV [auth BA],
DVA [auth DA],
DW [auth BA],
DWA [auth DA],
DX [auth BA],
DXA [auth D4],
DY [auth BA],
DZ [auth BA],
EAA [auth CA],
EBA [auth CA],
ECA [auth CA],
ED [auth AA],
EDA [auth CA],
EE [auth AA],
EEA [auth CA],
EF [auth AA],
EFA [auth CA],
EG [auth AA],
EGA [auth DA],
EH [auth AA],
EHA [auth DA],
EI [auth AA],
EIA [auth DA],
EJ [auth AA],
EJA [auth DA],
EK [auth BA],
EKA [auth DA],
EL [auth BA],
ELA [auth DA],
EM [auth BA],
EMA [auth DA],
EN [auth BA],
ENA [auth DA],
EO [auth BA],
EOA [auth DA],
EP [auth BA],
EPA [auth DA],
EQ [auth BA],
EQA [auth DA],
ER [auth BA],
ERA [auth DA],
ES [auth BA],
ESA [auth DA],
ET [auth BA],
ETA [auth DA],
EU [auth BA],
EUA [auth DA],
EV [auth BA],
EVA [auth DA],
EW [auth BA],
EWA [auth DA],
EX [auth BA],
EY [auth BA],
EZ [auth BA],
FAA [auth CA],
FBA [auth CA],
FCA [auth CA],
FD [auth AA],
FDA [auth CA],
FE [auth AA],
FEA [auth CA],
FF [auth AA],
FFA [auth CA],
FG [auth AA],
FGA [auth DA],
FH [auth AA],
FHA [auth DA],
FI [auth AA],
FIA [auth DA],
FJ [auth AA],
FJA [auth DA],
FK [auth BA],
FKA [auth DA],
FL [auth BA],
FLA [auth DA],
FM [auth BA],
FMA [auth DA],
FN [auth BA],
FNA [auth DA],
FO [auth BA],
FOA [auth DA],
FP [auth BA],
FPA [auth DA],
FQ [auth BA],
FQA [auth DA],
FR [auth BA],
FRA [auth DA],
FS [auth BA],
FSA [auth DA],
FT [auth BA],
FTA [auth DA],
FU [auth BA],
FUA [auth DA],
FV [auth BA],
FVA [auth DA],
FW [auth BA],
FWA [auth DA],
FX [auth BA],
FY [auth BA],
FZ [auth BA],
GAA [auth CA],
GBA [auth CA],
GCA [auth CA],
GD [auth AA],
GDA [auth CA],
GE [auth AA],
GEA [auth CA],
GF [auth AA],
GFA [auth CA],
GG [auth AA],
GGA [auth DA],
GH [auth AA],
GHA [auth DA],
GI [auth AA],
GIA [auth DA],
GJ [auth AA],
GJA [auth DA],
GK [auth BA],
GKA [auth DA],
GL [auth BA],
GLA [auth DA],
GM [auth BA],
GMA [auth DA],
GN [auth BA],
GNA [auth DA],
GO [auth BA],
GOA [auth DA],
GP [auth BA],
GPA [auth DA],
GQ [auth BA],
GQA [auth DA],
GR [auth BA],
GRA [auth DA],
GS [auth BA],
GSA [auth DA],
GT [auth BA],
GTA [auth DA],
GU [auth BA],
GUA [auth DA],
GV [auth BA],
GVA [auth DA],
GW [auth BA],
GWA [auth DA],
GX [auth BA],
GY [auth BA],
GZ [auth BA],
HAA [auth CA],
HBA [auth CA],
HCA [auth CA],
HD [auth AA],
HDA [auth CA],
HE [auth AA],
HEA [auth CA],
HF [auth AA],
HFA [auth CA],
HG [auth AA],
HGA [auth DA],
HH [auth AA],
HHA [auth DA],
HI [auth AA],
HIA [auth DA],
HJ [auth AA],
HJA [auth DA],
HK [auth BA],
HKA [auth DA],
HL [auth BA],
HLA [auth DA],
HM [auth BA],
HMA [auth DA],
HN [auth BA],
HNA [auth DA],
HO [auth BA],
HOA [auth DA],
HP [auth BA],
HPA [auth DA],
HQ [auth BA],
HQA [auth DA],
HR [auth BA],
HRA [auth DA],
HS [auth BA],
HSA [auth DA],
HT [auth BA],
HTA [auth DA],
HU [auth BA],
HUA [auth DA],
HV [auth BA],
HVA [auth DA],
HW [auth BA],
HWA [auth DA],
HX [auth BA],
HY [auth BA],
HZ [auth BA],
IAA [auth CA],
IBA [auth CA],
ICA [auth CA],
ID [auth AA],
IDA [auth CA],
IE [auth AA],
IEA [auth CA],
IF [auth AA],
IFA [auth CA],
IG [auth AA],
IGA [auth DA],
IH [auth AA],
IHA [auth DA],
II [auth AA],
IIA [auth DA],
IJ [auth AA],
IJA [auth DA],
IK [auth BA],
IKA [auth DA],
IL [auth BA],
ILA [auth DA],
IM [auth BA],
IMA [auth DA],
IN [auth BA],
INA [auth DA],
IO [auth BA],
IOA [auth DA],
IP [auth BA],
IPA [auth DA],
IQ [auth BA],
IQA [auth DA],
IR [auth BA],
IRA [auth DA],
IS [auth BA],
ISA [auth DA],
IT [auth BA],
ITA [auth DA],
IU [auth BA],
IUA [auth DA],
IV [auth BA],
IVA [auth DA],
IW [auth BA],
IWA [auth DA],
IX [auth BA],
IY [auth BA],
IZ [auth BB],
JAA [auth CA],
JBA [auth CA],
JCA [auth CA],
JD [auth AA],
JDA [auth CA],
JE [auth AA],
JEA [auth CA],
JF [auth AA],
JFA [auth CA],
JG [auth AA],
JGA [auth DA],
JH [auth AA],
JHA [auth DA],
JI [auth AA],
JIA [auth DA],
JJA [auth DA],
JK [auth BA],
JKA [auth DA],
JL [auth BA],
JLA [auth DA],
JM [auth BA],
JMA [auth DA],
JN [auth BA],
JNA [auth DA],
JO [auth BA],
JOA [auth DA],
JP [auth BA],
JPA [auth DA],
JQ [auth BA],
JQA [auth DA],
JR [auth BA],
JRA [auth DA],
JS [auth BA],
JSA [auth DA],
JT [auth BA],
JTA [auth DA],
JU [auth BA],
JUA [auth DA],
JV [auth BA],
JVA [auth DA],
JW [auth BA],
JWA [auth DB],
JX [auth BA],
JY [auth BA],
JZ [auth BB],
KAA [auth CA],
KBA [auth CA],
KCA [auth CA],
KD [auth AA],
KDA [auth CA],
KE [auth AA],
KEA [auth CA],
KF [auth AA],
KFA [auth CA],
KG [auth AA],
KGA [auth DA],
KH [auth AA],
KHA [auth DA],
KI [auth AA],
KIA [auth DA],
KJ [auth AD],
KJA [auth DA],
KK [auth BA],
KKA [auth DA],
KL [auth BA],
KLA [auth DA],
KM [auth BA],
KMA [auth DA],
KN [auth BA],
KNA [auth DA],
KO [auth BA],
KOA [auth DA],
KP [auth BA],
KPA [auth DA],
KQ [auth BA],
KQA [auth DA],
KR [auth BA],
KRA [auth DA],
KS [auth BA],
KSA [auth DA],
KT [auth BA],
KTA [auth DA],
KU [auth BA],
KUA [auth DA],
KV [auth BA],
KVA [auth DA],
KW [auth BA],
KWA [auth DB],
KX [auth BA],
KY [auth BA],
KZ [auth BB],
LAA [auth CA],
LBA [auth CA],
LCA [auth CA],
LD [auth AA],
LDA [auth CA],
LE [auth AA],
LEA [auth CA],
LF [auth AA],
LG [auth AA],
LGA [auth DA],
LH [auth AA],
LHA [auth DA],
LI [auth AA],
LIA [auth DA],
LJA [auth DA],
LK [auth BA],
LKA [auth DA],
LL [auth BA],
LLA [auth DA],
LM [auth BA],
LMA [auth DA],
LN [auth BA],
LNA [auth DA],
LO [auth BA],
LOA [auth DA],
LP [auth BA],
LPA [auth DA],
LQ [auth BA],
LQA [auth DA],
LR [auth BA],
LRA [auth DA],
LS [auth BA],
LSA [auth DA],
LT [auth BA],
LTA [auth DA],
LU [auth BA],
LUA [auth DA],
LV [auth BA],
LVA [auth DA],
LW [auth BA],
LWA [auth DB],
LX [auth BA],
LY [auth BA],
LZ [auth BB],
MAA [auth CA],
MBA [auth CA],
MCA [auth CA],
MD [auth AA],
MDA [auth CA],
ME [auth AA],
MEA [auth CA],
MF [auth AA],
MG [auth AA],
MGA [auth DA],
MH [auth AA],
MHA [auth DA],
MI [auth AA],
MIA [auth DA],
MJ [auth AV],
MJA [auth DA],
MK [auth BA],
MKA [auth DA],
ML [auth BA],
MLA [auth DA],
MM [auth BA],
MMA [auth DA],
MN [auth BA],
MNA [auth DA],
MO [auth BA],
MOA [auth DA],
MP [auth BA],
MPA [auth DA],
MQ [auth BA],
MQA [auth DA],
MR [auth BA],
MRA [auth DA],
MS [auth BA],
MSA [auth DA],
MT [auth BA],
MTA [auth DA],
MU [auth BA],
MUA [auth DA],
MV [auth BA],
MVA [auth DA],
MW [auth BA],
MWA [auth DB],
MX [auth BA],
MY [auth BA],
MZ [auth BB],
NAA [auth CA],
NBA [auth CA],
NCA [auth CA],
ND [auth AA],
NDA [auth CA],
NE [auth AA],
NEA [auth CA],
NF [auth AA],
NFA [auth CP],
NG [auth AA],
NGA [auth DA],
NH [auth AA],
NHA [auth DA],
NI [auth AA],
NIA [auth DA],
NJ [auth AV],
NJA [auth DA],
NK [auth BA],
NKA [auth DA],
NL [auth BA],
NLA [auth DA],
NM [auth BA],
NMA [auth DA],
NN [auth BA],
NNA [auth DA],
NO [auth BA],
NOA [auth DA],
NP [auth BA],
NPA [auth DA],
NQ [auth BA],
NQA [auth DA],
NR [auth BA],
NRA [auth DA],
NS [auth BA],
NSA [auth DA],
NT [auth BA],
NTA [auth DA],
NU [auth BA],
NUA [auth DA],
NV [auth BA],
NVA [auth DA],
NW [auth BA],
NWA [auth DB],
NX [auth BA],
NY [auth BA],
NZ [auth BB],
OAA [auth CA],
OBA [auth CA],
OCA [auth CA],
OD [auth AA],
ODA [auth CA],
OE [auth AA],
OEA [auth CA],
OF [auth AA],
OFA [auth CV],
OG [auth AA],
OGA [auth DA],
OH [auth AA],
OHA [auth DA],
OI [auth AA],
OIA [auth DA],
OJ [auth AV],
OJA [auth DA],
OK [auth BA],
OKA [auth DA],
OL [auth BA],
OLA [auth DA],
OM [auth BA],
OMA [auth DA],
ON [auth BA],
ONA [auth DA],
OO [auth BA],
OOA [auth DA],
OP [auth BA],
OPA [auth DA],
OQ [auth BA],
OQA [auth DA],
OR [auth BA],
ORA [auth DA],
OS [auth BA],
OSA [auth DA],
OT [auth BA],
OTA [auth DA],
OU [auth BA],
OUA [auth DA],
OV [auth BA],
OVA [auth DA],
OW [auth BA],
OWA [auth DB],
OX [auth BA],
OY [auth BA],
OZ [auth BB],
PAA [auth CA],
PBA [auth CA],
PCA [auth CA],
PD [auth AA],
PDA [auth CA],
PE [auth AA],
PEA [auth CA],
PF [auth AA],
PFA [auth DA],
PG [auth AA],
PGA [auth DA],
PH [auth AA],
PHA [auth DA],
PI [auth AA],
PIA [auth DA],
PJ [auth AV],
PJA [auth DA],
PK [auth BA],
PKA [auth DA],
PL [auth BA],
PLA [auth DA],
PM [auth BA],
PMA [auth DA],
PN [auth BA],
PNA [auth DA],
PO [auth BA],
POA [auth DA],
PP [auth BA],
PPA [auth DA],
PQ [auth BA],
PQA [auth DA],
PR [auth BA],
PRA [auth DA],
PS [auth BA],
PSA [auth DA],
PT [auth BA],
PTA [auth DA],
PU [auth BA],
PUA [auth DA],
PV [auth BA],
PVA [auth DA],
PW [auth BA],
PWA [auth DB],
PX [auth BA],
PY [auth BA],
PZ [auth BB],
QAA [auth CA],
QBA [auth CA],
QCA [auth CA],
QD [auth AA],
QDA [auth CA],
QE [auth AA],
QEA [auth CA],
QF [auth AA],
QFA [auth DA],
QG [auth AA],
QGA [auth DA],
QH [auth AA],
QHA [auth DA],
QI [auth AA],
QIA [auth DA],
QJ [auth BA],
QJA [auth DA],
QK [auth BA],
QKA [auth DA],
QL [auth BA],
QLA [auth DA],
QM [auth BA],
QMA [auth DA],
QN [auth BA],
QNA [auth DA],
QO [auth BA],
QOA [auth DA],
QP [auth BA],
QPA [auth DA],
QQ [auth BA],
QQA [auth DA],
QR [auth BA],
QRA [auth DA],
QS [auth BA],
QSA [auth DA],
QT [auth BA],
QTA [auth DA],
QU [auth BA],
QUA [auth DA],
QV [auth BA],
QVA [auth DA],
QW [auth BA],
QWA [auth DB],
QX [auth BA],
QY [auth BA],
QZ [auth BB],
RAA [auth CA],
RBA [auth CA],
RCA [auth CA],
RD [auth AA],
RDA [auth CA],
RE [auth AA],
REA [auth CA],
RF [auth AA],
RFA [auth DA],
RG [auth AA],
RGA [auth DA],
RH [auth AA],
RHA [auth DA],
RI [auth AA],
RIA [auth DA],
RJ [auth BA],
RJA [auth DA],
RK [auth BA],
RKA [auth DA],
RL [auth BA],
RLA [auth DA],
RM [auth BA],
RMA [auth DA],
RN [auth BA],
RNA [auth DA],
RO [auth BA],
ROA [auth DA],
RP [auth BA],
RPA [auth DA],
RQ [auth BA],
RQA [auth DA],
RR [auth BA],
RRA [auth DA],
RS [auth BA],
RSA [auth DA],
RT [auth BA],
RTA [auth DA],
RU [auth BA],
RUA [auth DA],
RV [auth BA],
RVA [auth DA],
RW [auth BA],
RWA [auth DB],
RX [auth BA],
RY [auth BA],
RZ [auth BB],
SAA [auth CA],
SBA [auth CA],
SCA [auth CA],
SD [auth AA],
SDA [auth CA],
SE [auth AA],
SEA [auth CA],
SF [auth AA],
SFA [auth DA],
SG [auth AA],
SGA [auth DA],
SH [auth AA],
SHA [auth DA],
SI [auth AA],
SIA [auth DA],
SJ [auth BA],
SJA [auth DA],
SK [auth BA],
SKA [auth DA],
SL [auth BA],
SLA [auth DA],
SM [auth BA],
SMA [auth DA],
SN [auth BA],
SNA [auth DA],
SO [auth BA],
SOA [auth DA],
SP [auth BA],
SPA [auth DA],
SQ [auth BA],
SQA [auth DA],
SR [auth BA],
SRA [auth DA],
SS [auth BA],
SSA [auth DA],
ST [auth BA],
STA [auth DA],
SU [auth BA],
SUA [auth DA],
SV [auth BA],
SVA [auth DA],
SW [auth BA],
SWA [auth DB],
SX [auth BA],
SY [auth BA],
SZ [auth BB],
TAA [auth CA],
TBA [auth CA],
TCA [auth CA],
TD [auth AA],
TDA [auth CA],
TE [auth AA],
TEA [auth CA],
TF [auth AA],
TFA [auth DA],
TG [auth AA],
TGA [auth DA],
TH [auth AA],
THA [auth DA],
TI [auth AA],
TIA [auth DA],
TJ [auth BA],
TJA [auth DA],
TK [auth BA],
TKA [auth DA],
TL [auth BA],
TLA [auth DA],
TM [auth BA],
TMA [auth DA],
TN [auth BA],
TNA [auth DA],
TO [auth BA],
TOA [auth DA],
TP [auth BA],
TPA [auth DA],
TQ [auth BA],
TQA [auth DA],
TR [auth BA],
TRA [auth DA],
TS [auth BA],
TSA [auth DA],
TT [auth BA],
TTA [auth DA],
TU [auth BA],
TUA [auth DA],
TV [auth BA],
TVA [auth DA],
TW [auth BA],
TWA [auth DB],
TX [auth BA],
TY [auth BA],
TZ [auth BB],
UAA [auth CA],
UBA [auth CA],
UCA [auth CA],
UD [auth AA],
UDA [auth CA],
UE [auth AA],
UEA [auth CA],
UF [auth AA],
UFA [auth DA],
UG [auth AA],
UGA [auth DA],
UH [auth AA],
UHA [auth DA],
UI [auth AA],
UIA [auth DA],
UJ [auth BA],
UJA [auth DA],
UK [auth BA],
UKA [auth DA],
UL [auth BA],
ULA [auth DA],
UM [auth BA],
UMA [auth DA],
UN [auth BA],
UNA [auth DA],
UO [auth BA],
UOA [auth DA],
UP [auth BA],
UPA [auth DA],
UQ [auth BA],
UQA [auth DA],
UR [auth BA],
URA [auth DA],
US [auth BA],
USA [auth DA],
UT [auth BA],
UTA [auth DA],
UU [auth BA],
UUA [auth DA],
UV [auth BA],
UVA [auth DA],
UW [auth BA],
UWA [auth DB],
UX [auth BA],
UY [auth BA],
UZ [auth BB],
VAA [auth CA],
VBA [auth CA],
VCA [auth CA],
VD [auth AA],
VDA [auth CA],
VE [auth AA],
VEA [auth CA],
VF [auth AA],
VFA [auth DA],
VG [auth AA],
VGA [auth DA],
VH [auth AA],
VHA [auth DA],
VI [auth AA],
VIA [auth DA],
VJ [auth BA],
VJA [auth DA],
VK [auth BA],
VKA [auth DA],
VL [auth BA],
VLA [auth DA],
VM [auth BA],
VMA [auth DA],
VN [auth BA],
VNA [auth DA],
VO [auth BA],
VOA [auth DA],
VP [auth BA],
VPA [auth DA],
VQ [auth BA],
VQA [auth DA],
VR [auth BA],
VRA [auth DA],
VS [auth BA],
VSA [auth DA],
VT [auth BA],
VTA [auth DA],
VU [auth BA],
VUA [auth DA],
VV [auth BA],
VVA [auth DA],
VW [auth BA],
VWA [auth DB],
VX [auth BA],
VY [auth BA],
VZ [auth BB],
WAA [auth CA],
WBA [auth CA],
WCA [auth CA],
WD [auth AA],
WDA [auth CA],
WE [auth AA],
WEA [auth CA],
WF [auth AA],
WFA [auth DA],
WG [auth AA],
WGA [auth DA],
WH [auth AA],
WHA [auth DA],
WI [auth AA],
WIA [auth DA],
WJ [auth BA],
WJA [auth DA],
WK [auth BA],
WKA [auth DA],
WL [auth BA],
WLA [auth DA],
WM [auth BA],
WMA [auth DA],
WN [auth BA],
WNA [auth DA],
WO [auth BA],
WOA [auth DA],
WP [auth BA],
WPA [auth DA],
WQ [auth BA],
WQA [auth DA],
WR [auth BA],
WRA [auth DA],
WS [auth BA],
WSA [auth DA],
WT [auth BA],
WTA [auth DA],
WU [auth BA],
WUA [auth DA],
WV [auth BA],
WVA [auth DA],
WW [auth BA],
WWA [auth DB],
WX [auth BA],
WY [auth BA],
WZ [auth BB],
XAA [auth CA],
XBA [auth CA],
XCA [auth CA],
XD [auth AA],
XDA [auth CA],
XE [auth AA],
XEA [auth CA],
XF [auth AA],
XFA [auth DA],
XG [auth AA],
XGA [auth DA],
XH [auth AA],
XHA [auth DA],
XI [auth AA],
XIA [auth DA],
XJ [auth BA],
XJA [auth DA],
XK [auth BA],
XKA [auth DA],
XL [auth BA],
XLA [auth DA],
XM [auth BA],
XMA [auth DA],
XN [auth BA],
XNA [auth DA],
XO [auth BA],
XOA [auth DA],
XP [auth BA],
XPA [auth DA],
XQ [auth BA],
XQA [auth DA],
XR [auth BA],
XRA [auth DA],
XS [auth BA],
XSA [auth DA],
XT [auth BA],
XTA [auth DA],
XU [auth BA],
XUA [auth DA],
XV [auth BA],
XVA [auth DA],
XW [auth BA],
XWA [auth DB],
XX [auth BA],
XY [auth BA],
XZ [auth BB],
YAA [auth CA],
YBA [auth CA],
YCA [auth CA],
YD [auth AA],
YDA [auth CA],
YE [auth AA],
YEA [auth CA],
YF [auth AA],
YFA [auth DA],
YG [auth AA],
YGA [auth DA],
YH [auth AA],
YHA [auth DA],
YI [auth AA],
YIA [auth DA],
YJ [auth BA],
YJA [auth DA],
YK [auth BA],
YKA [auth DA],
YL [auth BA],
YLA [auth DA],
YM [auth BA],
YMA [auth DA],
YN [auth BA],
YNA [auth DA],
YO [auth BA],
YOA [auth DA],
YP [auth BA],
YPA [auth DA],
YQ [auth BA],
YQA [auth DA],
YR [auth BA],
YRA [auth DA],
YS [auth BA],
YSA [auth DA],
YT [auth BA],
YTA [auth DA],
YU [auth BA],
YUA [auth DA],
YV [auth BA],
YVA [auth DA],
YW [auth BA],
YWA [auth DB],
YX [auth BA],
YY [auth BA],
YZ [auth BB],
ZAA [auth CA],
ZBA [auth CA],
ZCA [auth CA],
ZD [auth AA],
ZDA [auth CA],
ZE [auth AA],
ZEA [auth CA],
ZF [auth AA],
ZFA [auth DA],
ZG [auth AA],
ZGA [auth DA],
ZH [auth AA],
ZHA [auth DA],
ZI [auth AA],
ZIA [auth DA],
ZJ [auth BA],
ZJA [auth DA],
ZK [auth BA],
ZKA [auth DA],
ZL [auth BA],
ZLA [auth DA],
ZM [auth BA],
ZMA [auth DA],
ZN [auth BA],
ZNA [auth DA],
ZO [auth BA],
ZOA [auth DA],
ZP [auth BA],
ZPA [auth DA],
ZQ [auth BA],
ZQA [auth DA],
ZR [auth BA],
ZRA [auth DA],
ZS [auth BA],
ZSA [auth DA],
ZT [auth BA],
ZTA [auth DA],
ZU [auth BA],
ZUA [auth DA],
ZV [auth BA],
ZVA [auth DA],
ZW [auth BA],
ZWA [auth DB],
ZX [auth BA],
ZY [auth BA],
ZZ [auth BK]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.228 
  • R-Value Observed: 0.228 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 210.69α = 90
b = 451.66β = 90
c = 614.25γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
CNSrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
CNSphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Changes: Other
  • Version 1.2: 2018-04-11
    Changes: Data collection, Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2019-07-17
    Changes: Data collection, Refinement description