4UO9
Structure of the A_Canine_Colorado_17864_06 H3 haemagglutinin Ser30Thr mutant
- PDB DOI: https://doi.org/10.2210/pdb4UO9/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/canine/Colorado/17864/2006(H3N8))
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Deposited: 2014-05-31 Released: 2014-07-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.274
- R-Value Work: 0.218
- R-Value Observed: 0.221
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HA1 | 328 | Influenza A virus (A/canine/Colorado/17864/2006(H3N8)) | Mutation(s): 1 |  | |
UniProt | |||||
Find proteins for E0UVR5 (Influenza A virus) Explore E0UVR5 Go to UniProtKB: E0UVR5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E0UVR5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HA2 | 175 | Influenza A virus (A/canine/Colorado/17864/2006(H3N8)) | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for E0UVR5 (Influenza A virus) Explore E0UVR5 Go to UniProtKB: E0UVR5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E0UVR5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| SO4 Query on SO4 | H [auth A], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.274
- R-Value Work: 0.218
- R-Value Observed: 0.221
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.382 | α = 90 |
| b = 100.382 | β = 90 |
| c = 396.534 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2014-07-23 Deposition Author(s): Vachieri, S.G., Collins, P.J., Haire, L.F., Ogrodowicz, R.W., Martin, S.R., Walker, P.A., Xiong, X., Gamblin, S.J., Skehel, J.J.
Revision History (Full details and data files)
- Version 1.0: 2014-07-23
Type: Initial release - Version 1.1: 2014-08-13
Changes: Database references - Version 1.2: 2015-04-29
Changes: Database references, Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary
