Download MendeleyX-ray crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase from Burkholderia cenocepacia
Fairman, J.W., Dranow, D.M., Lorimer, D., Edwards, T.E.To be published.
4U3W
X-ray crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase from Burkholderia cenocepacia
- PDB DOI: https://doi.org/10.2210/pdb4U3W/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia cenocepacia J2315
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-07-23 Released: 2014-07-30
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.202
- R-Value Work: 0.166
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-aminomuconate 6-semialdehyde dehydrogenase | 505 | Burkholderia cenocepacia J2315 | Mutation(s): 0 Gene Names: nbaE, BCAM2132 |  | |
UniProt | |||||
Find proteins for B4EFS9 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)) Explore B4EFS9 Go to UniProtKB: B4EFS9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B4EFS9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A] D [auth A] E [auth A] G [auth B] H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.202
- R-Value Work: 0.166
- R-Value Observed: 0.168
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M34U3W
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 161.75 | α = 90 |
| b = 87.69 | β = 128.31 |
| c = 111.88 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| XDS | data scaling |
| PDB_EXTRACT | data extraction |
| PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Released Date: 2014-07-30 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2014-07-30
Type: Initial release - Version 1.1: 2014-08-06
Changes: Database references - Version 1.2: 2017-09-06
Changes: Author supporting evidence, Database references, Derived calculations, Other, Source and taxonomy, Structure summary - Version 1.3: 2017-11-22
Changes: Refinement description - Version 1.4: 2019-12-11
Changes: Author supporting evidence - Version 1.5: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
