Download MendeleyCrystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri
Kim, Y., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
4RCK
Crystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri
- PDB DOI: https://doi.org/10.2210/pdb4RCK/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Aliivibrio fischeri ES114
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-09-16 Released: 2014-11-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.237
- R-Value Work: 0.195
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical membrane spanning protein | 220 | Aliivibrio fischeri ES114 | Mutation(s): 0 Gene Names: VF_A0681 |  | |
UniProt | |||||
Find proteins for Q5DZP5 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Explore Q5DZP5 Go to UniProtKB: Q5DZP5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5DZP5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | C [auth A], D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.237
- R-Value Work: 0.195
- R-Value Observed: 0.197
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.734 | α = 90 |
| b = 49.734 | β = 90 |
| c = 343.88 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| DM | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2014-11-26 Deposition Author(s): Kim, Y., Tesar, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2014-11-26
Type: Initial release
