4R8W

Crystal structure of H7 hemagglutinin from A/Anhui/1/2013 in complex with a neutralizing antibody CT149


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.262 
  • R-Value Observed: 0.265 

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This is version 1.2 of the entry. See complete history


Literature

A potent broad-spectrum protective human monoclonal antibody crosslinking two haemagglutinin monomers of influenza A virus

Wu, Y.Cho, M.Shore, D.Song, M.Choi, J.Jiang, T.Deng, Y.Q.Bourgeois, M.Almli, L.Yang, H.Chen, L.M.Shi, Y.Qi, J.Li, A.Yi, K.S.Chang, M.Bae, J.S.Lee, H.Shin, J.Stevens, J.Hong, S.Qin, C.F.Gao, G.F.Chang, S.J.Donis, R.O.

(2015) Nat Commun 6: 7708-7708

  • DOI: https://doi.org/10.1038/ncomms8708
  • Primary Citation of Related Structures:  
    4R8W, 4UBD

  • PubMed Abstract: 

    Effective annual influenza vaccination requires frequent changes in vaccine composition due to both antigenic shift for different subtype hemagglutinins (HAs) and antigenic drift in a particular HA. Here we present a broadly neutralizing human monoclonal antibody with an unusual binding modality. The antibody, designated CT149, was isolated from convalescent patients infected with pandemic H1N1 in 2009. CT149 is found to neutralize all tested group 2 and some group 1 influenza A viruses by inhibiting low pH-induced, HA-mediated membrane fusion. It promotes killing of infected cells by Fc-mediated antibody-dependent cellular cytotoxicity and complement-dependent cytotoxicity. X-ray crystallographic data reveal that CT149 binds primarily to the fusion domain in HA2, and the light chain is also largely involved in binding. The epitope recognized by this antibody comprises amino-acid residues from two adjacent protomers of HA. This binding characteristic of CT149 will provide more information to support the design of more potent influenza vaccines.


  • Organizational Affiliation

    1] CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 West Beichen Road, Beijing 100101, China. [2] Center for Influenza Research and Early-warning, Chinese Academy of Sciences, No. 1 West Beichen Road, Beijing 100101, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hemagglutinin321Influenza A virus (A/Anhui/1-BALF_RG45/2013(H7N9))Mutation(s): 0 
Gene Names: HA
UniProt
Find proteins for A0A024E3P0 (Influenza A virus)
Explore A0A024E3P0 
Go to UniProtKB:  A0A024E3P0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A024E3P0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Hemagglutinin177Influenza A virus (A/Anhui/1-BALF_RG45/2013(H7N9))Mutation(s): 0 
Gene Names: HA
UniProt
Find proteins for A0A024E2M1 (Influenza A virus)
Explore A0A024E2M1 
Go to UniProtKB:  A0A024E2M1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A024E2M1
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Heavy chain of neutralizing antibody CT149C [auth H]231Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Light chain of neutralizing antibody CT149D [auth L]216Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.262 
  • R-Value Observed: 0.265 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 126.856α = 90
b = 126.856β = 90
c = 409.596γ = 120
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-08-26
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description, Structure summary