4PTU
Crystal Structure of anti-23F strep Fab C05 with rhamnose
- PDB DOI: https://doi.org/10.2210/pdb4PTU/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-03-11 Released: 2015-03-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.51 Å
- R-Value Free: 0.206
- R-Value Work: 0.179
- R-Value Observed: 0.180
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antibody pn132p2C05, light chain | 217 | Homo sapiens | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antibody pn132p2C05, heavy chain | 235 | Homo sapiens | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RAM Query on RAM | E [auth B] | alpha-L-rhamnopyranose C6 H12 O5 SHZGCJCMOBCMKK-HGVZOGFYSA-N |  | ||
| ACT Query on ACT | C [auth A], D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.51 Å
- R-Value Free: 0.206
- R-Value Work: 0.179
- R-Value Observed: 0.180
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 132.15 | α = 90 |
| b = 48.74 | β = 120.2 |
| c = 79.31 | γ = 90 |
| Software Name | Purpose |
|---|---|
| GM/CA | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2015-03-04 Deposition Author(s): Bryson, S., Risnes, L., Damgupta, S., Thomson, C.A., Smith, K., Schrader, J.W., Pai, E.F.
Revision History (Full details and data files)
- Version 1.0: 2015-03-04
Type: Initial release - Version 1.1: 2017-12-13
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2023-09-20
Changes: Data collection, Database references, Refinement description, Structure summary
