Download MendeleyCrystal structure of alpha/beta hydrolase from Rhodopseudomonas palustris CGA009
Nocek, B., Hajighasemi, M., Xu, X., Cui, H., Savchenko, A., Yakunin, A.To be published.
4PSU
Crystal structure of alpha/beta hydrolase from Rhodopseudomonas palustris CGA009
- PDB DOI: https://doi.org/10.2210/pdb4PSU/pdb
- Classification: HYDROLASE
- Organism(s): Rhodopseudomonas palustris CGA009
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-03-07 Released: 2015-03-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.221
- R-Value Work: 0.181
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha/beta hydrolase | 295 | Rhodopseudomonas palustris CGA009 | Mutation(s): 0 Gene Names: RPA1511 EC: 3 |  | |
UniProt | |||||
Find proteins for Q6N9M9 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6N9M9 Go to UniProtKB: Q6N9M9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6N9M9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 12P Query on 12P | B [auth A] | DODECAETHYLENE GLYCOL C24 H50 O13 WRZXKWFJEFFURH-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.221
- R-Value Work: 0.181
- R-Value Observed: 0.183
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.013 | α = 90 |
| b = 87.425 | β = 90 |
| c = 93.702 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP/wARP | model building |
| CCP4 | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2015-03-11 Deposition Author(s): Nocek, B., Hajighasemi, M., Xu, X., Cui, H., Savchenko, A., Yakunin, A.
Revision History (Full details and data files)
- Version 1.0: 2015-03-11
Type: Initial release
