4PIB

Crystal Structure of Uncharacterized Conserved Protein PixA from Burkholderia thailandensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of Uncharacterized Conserved Protein PixA from Burkholderia thailandensis

Kim, Y.Li, H.Clancy, S.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
inclusion body protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J
193Burkholderia thailandensis E264Mutation(s): 0 
Gene Names: BTH_I2413
UniProt
Find proteins for Q2SVW5 (Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264))
Explore Q2SVW5 
Go to UniProtKB:  Q2SVW5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2SVW5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
DB [auth I]
GA [auth D]
HA [auth D]
O [auth A]
P [auth A]
DB [auth I],
GA [auth D],
HA [auth D],
O [auth A],
P [auth A],
UA [auth G],
V [auth B],
W [auth B],
ZA [auth H]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
BA [auth C],
U [auth B]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
AA [auth C]
AB [auth I]
BB [auth I]
CA [auth D]
CB [auth I]
AA [auth C],
AB [auth I],
BB [auth I],
CA [auth D],
CB [auth I],
EA [auth D],
EB [auth J],
FA [auth D],
FB [auth J],
IA [auth E],
JA [auth E],
K [auth A],
LA [auth E],
M [auth A],
MA [auth E],
N [auth A],
NA [auth E],
OA [auth F],
PA [auth F],
Q [auth B],
RA [auth G],
S [auth B],
SA [auth G],
T [auth B],
TA [auth G],
VA [auth H],
X [auth C],
XA [auth H],
Y [auth C],
YA [auth H],
Z [auth C]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
DA [auth D]
GB [auth J]
KA [auth E]
L [auth A]
QA [auth F]
DA [auth D],
GB [auth J],
KA [auth E],
L [auth A],
QA [auth F],
R [auth B],
WA [auth H]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.181 
  • R-Value Observed: 0.183 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.806α = 90
b = 84.868β = 90
c = 249.693γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000phasing
RESOLVEmodel building
PHENIXphasing
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-07-02
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary
  • Version 1.2: 2023-12-27
    Changes: Data collection, Database references, Derived calculations, Refinement description