Download MendeleyCrystal structure of ABC transporter solute binding protein from Thermobispora bispora DSM 43833
Chang, C., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
4PE6
Crystal structure of ABC transporter solute binding protein from Thermobispora bispora DSM 43833
- PDB DOI: https://doi.org/10.2210/pdb4PE6/pdb
- Classification: SOLUTE-BINDING PROTEIN
- Organism(s): Thermobispora bispora DSM 43833
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-04-22 Released: 2014-05-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.218
- R-Value Work: 0.182
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative ABC transporter | 341 | Thermobispora bispora DSM 43833 | Mutation(s): 0 Gene Names: Tbis_1193 |  | |
UniProt | |||||
Find proteins for D6Y8L8 (Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / KCTC 9307 / NBRC 14880 / R51)) Explore D6Y8L8 Go to UniProtKB: D6Y8L8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D6Y8L8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| LTH Query on LTH | C [auth A], D [auth B] | (2R,3S)-2,3,4-trihydroxybutanoic acid C4 H8 O5 JPIJQSOTBSSVTP-STHAYSLISA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.218
- R-Value Work: 0.182
- R-Value Observed: 0.184
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.724 | α = 90 |
| b = 77.375 | β = 90.37 |
| c = 79.472 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2014-05-07 Deposition Author(s): Chang, C., Li, H., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2014-05-07
Type: Initial release - Version 1.1: 2015-02-04
Changes: Derived calculations - Version 1.2: 2017-11-22
Changes: Database references, Derived calculations, Other, Refinement description, Source and taxonomy, Structure summary - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Refinement description
