Download MendeleyCrystal structure of putative methyltransferase from Pseudomonas syringae pv. tomato
Chang, C., Mack, J., Clancy, S., Joachimiak, A.To be published.
4P7C
Crystal structure of putative methyltransferase from Pseudomonas syringae pv. tomato
- PDB DOI: https://doi.org/10.2210/pdb4P7C/pdb
- Classification: TRANSFERASE
- Organism(s): Pseudomonas syringae pv. tomato str. DC3000
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-03-26 Released: 2014-04-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.197
- R-Value Work: 0.152
- R-Value Observed: 0.154
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| tRNA (mo5U34)-methyltransferase | 322 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0 Gene Names: cmoB, PSPTO_4213 EC: 2.1.1 |  | |
UniProt | |||||
Find proteins for Q87XG5 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87XG5 Go to UniProtKB: Q87XG5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q87XG5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BTB Query on BTB | C [auth A] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | D [auth A], E [auth A], F [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.197
- R-Value Work: 0.152
- R-Value Observed: 0.154
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.076 | α = 90 |
| b = 88.732 | β = 90 |
| c = 128.094 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2014-04-09 Deposition Author(s): Chang, C., Mack, J., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2014-04-09
Type: Initial release - Version 1.1: 2014-04-16
Changes: Structure summary - Version 1.2: 2014-08-06
Changes: Derived calculations - Version 1.3: 2023-12-27
Changes: Advisory, Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy
