Download MendeleyABC Transporter Substrate-Binding Protein fromDesulfitobacterium hafniense
Kim, Y., Chhor, G., Endres, M., Joachimiak, A.To be published.
4MLC
ABC Transporter Substrate-Binding Protein fromDesulfitobacterium hafniense
- PDB DOI: https://doi.org/10.2210/pdb4MLC/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Desulfitobacterium hafniense DCB-2
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2013-09-06 Released: 2013-09-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.71 Å
- R-Value Free: 0.219
- R-Value Work: 0.166
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Extracellular ligand-binding receptor | 356 | Desulfitobacterium hafniense DCB-2 | Mutation(s): 0 Gene Names: Dhaf_0110 |  | |
UniProt | |||||
Find proteins for B8FZ96 (Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)) Explore B8FZ96 Go to UniProtKB: B8FZ96 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B8FZ96 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.71 Å
- R-Value Free: 0.219
- R-Value Work: 0.166
- R-Value Observed: 0.171
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.195 | α = 90 |
| b = 81.796 | β = 90 |
| c = 128.739 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| PHENIX | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2013-09-18 Deposition Author(s): Kim, Y., Chhor, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-09-18
Type: Initial release
