Download MendeleyCrystal structure of periplasmic solute binding protein from Mycobacterium smegmatis str. MC2 155
Chang, C., Wu, R., Endres, M., Joachimiak, A.To be published.
4MDY
Crystal structure of periplasmic solute binding protein from Mycobacterium smegmatis str. MC2 155
- PDB DOI: https://doi.org/10.2210/pdb4MDY/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Mycolicibacterium smegmatis MC2 155
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-08-23 Released: 2013-09-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.201
- R-Value Work: 0.146
- R-Value Observed: 0.149
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Periplasmic binding protein | 295 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0 Gene Names: MSMEG_0438, MSMEI_0427 |  | |
UniProt | |||||
Find proteins for A0QPL3 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QPL3 Go to UniProtKB: A0QPL3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0QPL3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | B [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.78 Å
- R-Value Free: 0.201
- R-Value Work: 0.146
- R-Value Observed: 0.149
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 83.606 | α = 90 |
| b = 90.449 | β = 90 |
| c = 33.974 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SHELXDE | phasing |
| ARP/wARP | model building |
| RESOLVE | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2013-09-04 Deposition Author(s): Chang, C., Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-09-04
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description
